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All (2)
RStudio
GraphPad
 

About 34 products / 460 snippets / 18 images

94 / 100
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R studio ggplot2
RStudio  
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"Volcano plots showing differential expression were created using R studio ggplot2."  (see more)
80 / 100
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R studio ggplot2 package
RStudio  
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Article Snippets
"The analysis was carried out using the R studio ggplot2 package."  (see more)
14+  more images
(A) RNA-seq using shLUC- or shXPO6-#3-infected MCF-7 cells expressing XPO6(WT) or XPO6(RNAi-Res). GSEA evaluating changes in the 50 hallmark gene sets induced by XPO6 knockdown. Shown are MYC targets V1 and V2 gene sets. (B and C) qRT-PCR validation of DE genes induced by XPO6 knockdown specifically in MCF-7 cells expressing XPO6(WT) but not XPO6(RNAi-Res). (B) XPO6 and MYC target genes NCL (activated) and HMOX1 (repressed) were analyzed. (C) Various known SEC target genes were analyzed. p values were based on unpaired t test by comparing shLUC versus shXPO6 for each gene. (D) Representative gene sets significantly enriched by XPO6 knockdown in MCF-7 cells expressing XPO6(WT) but not XPO6(RNAi-Res). Analysis was performed using R/GAGE against GO molecular functions and multiple curated MSigDB databases (hallmark, KEGG, Reactome, Chemical and Genetic Perturbation) and graphed by <t>R/ggplot2.</t> (E) MDA-MB-231 cells infected with control or sgXPO6 viruses were treated with DMSO or JQ1 in colony formation assays for 10 days. p values were based on one-way ANOVA and Dunnett’s multiple comparisons by comparing control and sgXPO6 cells at different JQ1 concentrations. Data in (B), (C), and (E) are mean ± SEM of representative experiments (triplicates per condition) and were confirmed three times. (F) MDA-MB-231 cells from (E) were orthotopically injected into female nude mice and treated with vehicle or JQ1 for 3 weeks. Mice in the sgXPO6 #1 and #3 groups were combined for analysis. Arrows indicate treatment start dates. p values were based on two-way ANOVA and Sidak’s multiple comparison tests to compare vehicle versus JQ1 groups. (G) Relative growth rates of individual tumors during the dosing period were first calculated by dividing tumor volumes at various time points by day 1. The calculated tumor growth rates in the JQ1 groups of control or sgXPO6 mice were subsequently divided by the averaged growth rates of the corresponding vehicle groups, giving rise to the relative JQ effect (y axis). p values were based on two-way ANOVA and Sidak’s multiple comparison tests. *p < 0.05; **p < 0.01; ***p < 0.001; ****p < 0.0001. See also – and .
RNAseq
INFECT
EXP
KD
qRT-PCR
Pairwise genome alignment of E. ictaluri isolates recovered from P. hypophthalmus in Vietnam between 2001 and 2021. Dot plots of isolates are ordered by year from top left (2002) to bottom right (2021). The genome of Ei-31, recovered in 2001, was used as the reference genome and aligned with query genomes using MUMmer. Dot plots were generated in RStudio using <t>ggplot2</t> (see methods).
The estimated parasite equivalent loads in 1 ml of total blood from children in each follow-up time points for 12 months. Association was determined between two groups by the nonparametric Mann-Whitney test (**** P <0.0001): a) before treatment versus after 30 days of treatment; b) before treatment versus after 60 days of treatment; c) before treatment versus after four months of treatment; d) before treatment versus after 6 months of treatment; e) before treatment versus after eight months of treatment; f) before treatment versus after 12 months of treatment. Lines represent median and IQ. Each dot represents DNA copies of parasite equivalent in one ml of total blood by qPCR. Loess curve is shown in color blue using a bandwidth of one. The graph was constructed using the <t>ggplot2</t> package in the R program. BNZ, treatment with Benznidazole.
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80 / 100
Bioz Stars
R studio ggplot2 library
RStudio  
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"KEGG and GO Terms enrichment analysis and dot-plots were generated with R studio ggplot2 library (Ge et al., 2020)."  (see more)
90 / 100
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Ggplot2 R studio 4.0.3 package
RStudio  
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"Data visualization was conducted using the ggplot2 R studio 4.0.3 package (Rstudio, PBC, Boston, MA, USA)."  (see more)
80 / 100
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Ggplot 2 package in RStudio
RStudio  
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"Ggplot 2 package in RStudio (R Core Team, Vienna, Austria; version 3.6.4), originally written Python script (Python .."  (see more)
80 / 100
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RStudio / ggplot2
RStudio  
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"RStudio / ggplot2 , The R foundation , N/A."  (see more)
RNAseq
INFECT
EXP
KD
qRT-PCR
91 / 100
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R (R Studio, version 0.99.903, Inc., with package “ggplot2”)
RStudio  
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"All analyses were performed using SPSS ® version 24 (IBM, Armonk, NY, USA) and R (R Studio, version 0.99.903, Inc., with package “ggplot2”)."  (see more)
92 / 100
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Ggplot2 in RStudio
RStudio  
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"Visualization of antibiotic susceptibility and gene detection profiles were achieved through the generation of heatmaps using ggplot2 in RStudio (v. 1.1.453)."  (see more)
92 / 100
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Ggplot2 in RStudio
RStudio  
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"Average signal intensity was then measured by object, normalised by nuclear area and plotted using ggplot2 in RStudio (version 2022.02.3, R version 4.1.1)."  (see more)
92 / 100
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Ggplot2 in RStudio
RStudio  
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".. (PCoA) with Bray-Curtis dissimilarity were carried out and visualised using microeco and ggplot2 in RStudio (2022.07.1) – ."  (see more)
92 / 100
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Ggplot2 via RStudio
RStudio  
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"Graphs were generated using ggplot2 via RStudio (version 2022.12.0.353, Boston, MA, USA)."  (see more)
94 / 100
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Ggplot2 package in RStudio
RStudio  
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"Figure was generated using the ggplot2 package in RStudio (version 1.2.1335; https://rstudio.com ) and final figure layouts were adjusted with Adobe Illustrator (version CS6)."  (see more)
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