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zebrafish 4 × 180 k microarray platform  (Agilent technologies)


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    Structured Review

    Agilent technologies zebrafish 4 × 180 k microarray platform
    Zebrafish 4 × 180 K Microarray Platform, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/zebrafish+microarray+platform/pm36126741-89-18-20
    Average 90 stars, based on 1 article reviews
    zebrafish 4 × 180 k microarray platform - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Microarray:

    Article Title: COL3A1, COL5A1 and COL6A2 serve as potential molecular biomarkers for osteoarthritis based on weighted gene co‑expression network analysis bioinformatics analysis
    Article Snippet: .. GSE51588, a whole-genome profiling study was performed on an Agilent microarray platform and analyzed using an Agilent GeneSpring GX11.5 (Agilent Technologies, Inc.), consisted of 40 OA subchondral bone samples and 10 healthy tissue samples for identification of differentially expressed genes (DEGs) in OA subchondral bone. ..

    Article Title: Sex disparities in non-small cell lung cancer: mechanistic insights from a cRaf transgenic disease model
    Article Snippet: .. Agilent microarray platform: We dephosphorylated 100 ng of total RNA and performed 3′ end labelling with the Cy3-pCp dye, purified the samples with Micro Bio-Spin columns, and hybridized the samples onto arrays with the miRNA Microarray System labelling kit V2 according to the manufacturer’s instructions ( https://www.agilent.com/store/en_US/Prod-5190-0456/5190-0456 ). .. The Agilent mouse miRNA microarray (Release 12.0, catalogue ID G4472B) contains 612 mouse mature miRNAs ( https://www.agilent.com/cs/library/usermanuals/public/G4170-90011.pdf ).

    Article Title: PARP1 Characterization as a Potential Biomarker for BCR::ABL1 p190+ Acute Lymphoblastic Leukemia
    Article Snippet: .. Array-CGH (aCGH) experiments were performed on an Agilent microarray platform (Agilent Technologies) with a SurePrint G3 Cancer CGH + SNP Microarray 4 × 180 K slide (Agilent). .. Sample preparation, labelling, and microarray hybridization were performed according to the Agilent CGH Enzymatic Protocol version 7.5.

    Article Title: Unveil Intrahepatic Cholangiocarcinoma Heterogeneity through the Lens of Omics and Multi-Omics Approaches
    Article Snippet: .. Peraldo-Neia et al. [ ] performed gene expression profiling by the Agilent microarray platform in 11 pairs of primary (PR) and recurrent (REC) iCCA tumors collected from the same patient. ..

    Article Title: Occupational exposure to potentially toxic elements alters gene expression profiles in formal and informal Brazilian workers.
    Article Snippet: Chemical elements, such as toxic metals, have previously demonstrated their ability to alter gene expression in humans and other species.. In this study, microarray analysis was used to compare the gene expression profiles of different occupational exposure populations: a) informal workers who perform soldering of jewelry inside their houses (n = 22) in São Paulo (SP) State; and b) formal workers from a steel company (n = 10) in Rio de Janeiro (RJ) state, Brazil.. Control participants were recruited from the same neighborhoods without occupational chemical exposure (n = 19 in SP and n = 8 in RJ).

    Article Title: Cytological, transcriptome and miRNome temporal landscapes decode enhancement of rice grain size
    Article Snippet: .. In line with the effectivity of this methodology, recently, a protocol has been developed to specifically examine both indica and japonica whole grains using an Agilent microarray platform [ ]. ..

    Article Title: Microarray evidence that 8-cell human embryos express some hormone family members including oxytocin.
    Article Snippet: Objective This study is to discover hormone pathways active in early cleaving human embryos.. Methods A list of 152 hormones and receptors were compiled to query the microarray database of mRNAs in 8-cell human embryos, two lines of human embryonic stem cells plus human fibroblasts before and after induced pluripotency.. Results Over half of the 152 hormones and receptors were silent on the arrays of all cell types, and more were detected at high or moderate levels on the 8-cell arrays than on the pluripotent cell or fibroblast arrays.

    Purification:

    Article Title: Sex disparities in non-small cell lung cancer: mechanistic insights from a cRaf transgenic disease model
    Article Snippet: .. Agilent microarray platform: We dephosphorylated 100 ng of total RNA and performed 3′ end labelling with the Cy3-pCp dye, purified the samples with Micro Bio-Spin columns, and hybridized the samples onto arrays with the miRNA Microarray System labelling kit V2 according to the manufacturer’s instructions ( https://www.agilent.com/store/en_US/Prod-5190-0456/5190-0456 ). .. The Agilent mouse miRNA microarray (Release 12.0, catalogue ID G4472B) contains 612 mouse mature miRNAs ( https://www.agilent.com/cs/library/usermanuals/public/G4170-90011.pdf ).

    Gene Expression:

    Article Title: Unveil Intrahepatic Cholangiocarcinoma Heterogeneity through the Lens of Omics and Multi-Omics Approaches
    Article Snippet: .. Peraldo-Neia et al. [ ] performed gene expression profiling by the Agilent microarray platform in 11 pairs of primary (PR) and recurrent (REC) iCCA tumors collected from the same patient. ..



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    Image Search Results


    Of 12261 potential unique genes, the mRNA expression of 1313 were found to be statistically significantly changed at 24 hpf, with 583 downregulated (grey) and 730 upregulated (black). 836 genes were changed with statistical significance at 36 hpf, of which 243 were downregulated and 593 were upregulated. (n=3 pools of 25 embryos used for microarray analysis, P≤0.05, Students t -test with Benjamini-Hochberg false-discovery rate correction).

    Journal: PLoS ONE

    Article Title: The Transcriptomics of Glucocorticoid Receptor Signaling in Developing Zebrafish

    doi: 10.1371/journal.pone.0080726

    Figure Lengend Snippet: Of 12261 potential unique genes, the mRNA expression of 1313 were found to be statistically significantly changed at 24 hpf, with 583 downregulated (grey) and 730 upregulated (black). 836 genes were changed with statistical significance at 36 hpf, of which 243 were downregulated and 593 were upregulated. (n=3 pools of 25 embryos used for microarray analysis, P≤0.05, Students t -test with Benjamini-Hochberg false-discovery rate correction).

    Article Snippet: To better understand of the molecular mechanisms involved, we investigated changes in the developmental transcriptome prior to hatch, in response to morpholino oligonucleotide knockdown of GR using the Agilent zebrafish microarray platform.

    Techniques: Expressing, Microarray

    qPCR analysis was performed on 7 genes to confirm the transcript abundance seen with the microarray analysis. The selected genes were bmp7a (A), f5 (B) , ff1d (C), myom1a (D), pomca (E), star (F), mc1r (G). Data is presented as mean ± standard error of the mean (normalized to β-actin, SEM; n=5-7 pools of 25 embryos each); * denotes statistical significance ( t -test, p<0.05). (See for fold-changes and p-values).

    Journal: PLoS ONE

    Article Title: The Transcriptomics of Glucocorticoid Receptor Signaling in Developing Zebrafish

    doi: 10.1371/journal.pone.0080726

    Figure Lengend Snippet: qPCR analysis was performed on 7 genes to confirm the transcript abundance seen with the microarray analysis. The selected genes were bmp7a (A), f5 (B) , ff1d (C), myom1a (D), pomca (E), star (F), mc1r (G). Data is presented as mean ± standard error of the mean (normalized to β-actin, SEM; n=5-7 pools of 25 embryos each); * denotes statistical significance ( t -test, p<0.05). (See for fold-changes and p-values).

    Article Snippet: To better understand of the molecular mechanisms involved, we investigated changes in the developmental transcriptome prior to hatch, in response to morpholino oligonucleotide knockdown of GR using the Agilent zebrafish microarray platform.

    Techniques: Microarray

    List of genes confirmed using  microarray  and qPCR with fold-changes and p-values.

    Journal: PLoS ONE

    Article Title: The Transcriptomics of Glucocorticoid Receptor Signaling in Developing Zebrafish

    doi: 10.1371/journal.pone.0080726

    Figure Lengend Snippet: List of genes confirmed using microarray and qPCR with fold-changes and p-values.

    Article Snippet: To better understand of the molecular mechanisms involved, we investigated changes in the developmental transcriptome prior to hatch, in response to morpholino oligonucleotide knockdown of GR using the Agilent zebrafish microarray platform.

    Techniques: Microarray