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zebrafish-specific microarray platform arrayxs zebrafish v1 zv9  (OakLabs Inc)

 
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    OakLabs Inc zebrafish-specific microarray platform arrayxs zebrafish v1 zv9
    Zebrafish Specific Microarray Platform Arrayxs Zebrafish V1 Zv9, supplied by OakLabs Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/zebrafish+microarray+platform/arrayxs+zebrafish+microarray+slides/bio_rxiv__687798-42-12-4
    Average 90 stars, based on 1 article reviews
    zebrafish-specific microarray platform arrayxs zebrafish v1 zv9 - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Gene Expression:

    Article Title: Distinct myocardial lineages break atrial symmetry during cardiogenesis in zebrafish
    Article Snippet: Total RNA was isolated using TRIzol and purified using column-based affinity purification (RNA Clean and Concentrator kit, Zymo Research). .. Gene expression profiles were established using single color microarray analysis OakLabs (Hennigsdorf, Germany) using the ArrayXS Zebrafish 8 × 60K platform (OakLabs). .. The Ensembl annotation was enriched with UniProt data (release 06.06.2014) based on Ensembl gene identifiers.

    Article Title: Distinct myocardial lineages break atrial symmetry during cardiogenesis in zebrafish
    Article Snippet: Total RNA was isolated using TRIzol and purified using column-based affinity purification (RNA Clean and Concentrator kit, Zymo Research). .. Gene expression profiles were established using single color microarray analysis OakLabs (Hennigsdorf, Germany) using the ArrayXS Zebrafish 8 60K platform (OakLabs). ..

    Microarray:

    Article Title: Distinct myocardial lineages break atrial symmetry during cardiogenesis in zebrafish
    Article Snippet: Total RNA was isolated using TRIzol and purified using column-based affinity purification (RNA Clean and Concentrator kit, Zymo Research). .. Gene expression profiles were established using single color microarray analysis OakLabs (Hennigsdorf, Germany) using the ArrayXS Zebrafish 8 × 60K platform (OakLabs). .. The Ensembl annotation was enriched with UniProt data (release 06.06.2014) based on Ensembl gene identifiers.

    Article Title: PITX2 deficiency and associated human disease: insights from the zebrafish model
    Article Snippet: RNA quality was assessed on both a NanoDrop 2000 UV-Vis Spectrophotometer (Thermo Fisher) and an Agilent 2100 Bioanalyzer utilizing the Agilent RNA 6000 Pico Kit (Agilent Technologies, Santa Clara, CA). .. RNA from three independent pitx2 M64 * homozygous eye collections with RNA Integrity Numbers (RINs) of 8.9, 8.6 and 9.0 and three independent wild-type collections with RINs 8.7, 8.9, and 8.7 was submitted to OakLabs (Hennigsdorf, Germany) for transcriptome analysis using an ArrayXS Zebrafish v1 microarray containing 60 023 target IDs. .. Statistical analysis of the microarray data was performed by Oaklabs and consisted of quantile normalization using ranked median quantiles, conversion to log2 values for calculation of control versus mutant means and standard deviations per target, and Welch’s t-test (or unequal variances t-test) that was used to test the hypothesis that the signals of the gene in the two biological groups of samples (e.g. mutant and wild-type) have equal means.

    Article Title: Dynamics in zebrafish development define transcriptomic specificity after angiogenesis inhibitor exposure.
    Article Snippet: .. The cRNA was fragmented and hybridized to Oaklabs ArrayXS Zebrafish microarray slides using the Agilent hybridization kit and protocol as well as Agilent hybridization oven and chambers. .. Subsequently, microarray slides were washed and scanned with the Agilent high-resolution microarray scanner according to the Agilent protocol.

    Article Title: Distinct myocardial lineages break atrial symmetry during cardiogenesis in zebrafish
    Article Snippet: Total RNA was isolated using TRIzol and purified using column-based affinity purification (RNA Clean and Concentrator kit, Zymo Research). .. Gene expression profiles were established using single color microarray analysis OakLabs (Hennigsdorf, Germany) using the ArrayXS Zebrafish 8 60K platform (OakLabs). ..

    Article Title: Transcriptome-Wide Prediction and Measurement of Combined Effects Induced by Chemical Mixture Exposure in Zebrafish Embryos
    Article Snippet: .. The cRNA was fragmented and hybridized to Oaklabs ArrayXS Zebrafish microarray slides using the Agilent hybridization kit and protocol as well as Agilent hybridization oven and chambers. .. Subsequently, microarray slides were washed and scanned with the Agilent High-Resolution Microarray Scanner according to the Agilent protocol.

    other:

    Article Title: notum1 , acting downstream of pitx2, is essential for proper eye and craniofacial development
    Article Snippet: RNA was submitted to OakLabs (Hennigsdorf, Germany) for transcriptome analysis using the zebrafish-specific microarray platform ArrayXS Zebrafish v1 Zv9 with 60,023 target IDs.

    Article Title: Dynamics in zebrafish development define transcriptomic specificity after angiogenesis inhibitor exposure.
    Article Snippet: Transcript abundance was measured with microarray analysis using Oaklabs ArrayXS Zebrafish microarray slides (XS-200,104, Oaklabs; National Center for Biotechnology Information Gene Expression Omnibus platform accession: GPL19785).

    Article Title: Map and model—moving from observation to prediction in toxicogenomics
    Article Snippet: At 6 time points between 3 and 72 hpe RNA was extracted and the transcriptome was measured using Oaklabs (Berlin, Germany) Zebrafish XS Microarrays.

    Hybridization:

    Article Title: Dynamics in zebrafish development define transcriptomic specificity after angiogenesis inhibitor exposure.
    Article Snippet: .. The cRNA was fragmented and hybridized to Oaklabs ArrayXS Zebrafish microarray slides using the Agilent hybridization kit and protocol as well as Agilent hybridization oven and chambers. .. Subsequently, microarray slides were washed and scanned with the Agilent high-resolution microarray scanner according to the Agilent protocol.

    Article Title: Transcriptome-Wide Prediction and Measurement of Combined Effects Induced by Chemical Mixture Exposure in Zebrafish Embryos
    Article Snippet: .. The cRNA was fragmented and hybridized to Oaklabs ArrayXS Zebrafish microarray slides using the Agilent hybridization kit and protocol as well as Agilent hybridization oven and chambers. .. Subsequently, microarray slides were washed and scanned with the Agilent High-Resolution Microarray Scanner according to the Agilent protocol.



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    Image Search Results


    Of 12261 potential unique genes, the mRNA expression of 1313 were found to be statistically significantly changed at 24 hpf, with 583 downregulated (grey) and 730 upregulated (black). 836 genes were changed with statistical significance at 36 hpf, of which 243 were downregulated and 593 were upregulated. (n=3 pools of 25 embryos used for microarray analysis, P≤0.05, Students t -test with Benjamini-Hochberg false-discovery rate correction).

    Journal: PLoS ONE

    Article Title: The Transcriptomics of Glucocorticoid Receptor Signaling in Developing Zebrafish

    doi: 10.1371/journal.pone.0080726

    Figure Lengend Snippet: Of 12261 potential unique genes, the mRNA expression of 1313 were found to be statistically significantly changed at 24 hpf, with 583 downregulated (grey) and 730 upregulated (black). 836 genes were changed with statistical significance at 36 hpf, of which 243 were downregulated and 593 were upregulated. (n=3 pools of 25 embryos used for microarray analysis, P≤0.05, Students t -test with Benjamini-Hochberg false-discovery rate correction).

    Article Snippet: To better understand of the molecular mechanisms involved, we investigated changes in the developmental transcriptome prior to hatch, in response to morpholino oligonucleotide knockdown of GR using the Agilent zebrafish microarray platform.

    Techniques: Expressing, Microarray

    qPCR analysis was performed on 7 genes to confirm the transcript abundance seen with the microarray analysis. The selected genes were bmp7a (A), f5 (B) , ff1d (C), myom1a (D), pomca (E), star (F), mc1r (G). Data is presented as mean ± standard error of the mean (normalized to β-actin, SEM; n=5-7 pools of 25 embryos each); * denotes statistical significance ( t -test, p<0.05). (See for fold-changes and p-values).

    Journal: PLoS ONE

    Article Title: The Transcriptomics of Glucocorticoid Receptor Signaling in Developing Zebrafish

    doi: 10.1371/journal.pone.0080726

    Figure Lengend Snippet: qPCR analysis was performed on 7 genes to confirm the transcript abundance seen with the microarray analysis. The selected genes were bmp7a (A), f5 (B) , ff1d (C), myom1a (D), pomca (E), star (F), mc1r (G). Data is presented as mean ± standard error of the mean (normalized to β-actin, SEM; n=5-7 pools of 25 embryos each); * denotes statistical significance ( t -test, p<0.05). (See for fold-changes and p-values).

    Article Snippet: To better understand of the molecular mechanisms involved, we investigated changes in the developmental transcriptome prior to hatch, in response to morpholino oligonucleotide knockdown of GR using the Agilent zebrafish microarray platform.

    Techniques: Microarray

    List of genes confirmed using microarray and qPCR with fold-changes and p-values.

    Journal: PLoS ONE

    Article Title: The Transcriptomics of Glucocorticoid Receptor Signaling in Developing Zebrafish

    doi: 10.1371/journal.pone.0080726

    Figure Lengend Snippet: List of genes confirmed using microarray and qPCR with fold-changes and p-values.

    Article Snippet: To better understand of the molecular mechanisms involved, we investigated changes in the developmental transcriptome prior to hatch, in response to morpholino oligonucleotide knockdown of GR using the Agilent zebrafish microarray platform.

    Techniques: Microarray