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high-density oligonucleotide microarray analysis  (Thermo Fisher)


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    Thermo Fisher high-density oligonucleotide microarray analysis
    High Density Oligonucleotide Microarray Analysis, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/high-density+microarray+analysis/pm16356109-114-39-38
    Average 90 stars, based on 1 article reviews
    high-density oligonucleotide microarray analysis - by Bioz Stars, 2026-09
    90/100 stars

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    other:

    Article Title: Prognostic Potential and Tumor Growth-Inhibiting Effect of Plasma Advanced Glycation End Products in Non-Small Cell Lung Carcinoma
    Article Snippet: Expression Analyses For RNA expression analysis, total RNA was isolated with Trizol reagent (Invitrogen), cleaned up (RNeasy Mini Kit; Qiagen, Hilden, Germany) and subjected to high-density oligonucleotide microarray (Affymetrix, Santa Clara, CA, USA) as described previously for human lung tissues ( 29 ) and H358 cells ( 30 ).

    Article Title: Poster Session 4: Experimental Hepatocarcinogenesis; Hepatitis B: Treatment
    Article Snippet: Methods: We investigated DNA copy number aberrations in 20 HCC cell lines using a high-density oligonucleotide microarray (GeneChip Mapping 100K and 250K arrays, Affymetrix).

    Article Title: SOX4 is a direct target gene of FRA-2 and induces expression of HDAC8 in adult T-cell leukemia/lymphoma.
    Article Snippet: • SOX4 is consistently expressed in ATL, is involved in ATL cell growth, and induces genes such as GCRK, NAP1, and HDAC8 in ATL.. • FRA-2/JUND and SOX4 form an important oncogenic cascade in ATL, leading to upregulation of genes such as HDAC8.. Previously, wehaveshown that anAP-1 familymember,FRA-2, is constitutively expressed in adult T-cell leukemia/lymphoma (ATL) and, together with JUND, upregulates CCR4 and promotesATLcell growth.

    Microarray:

    Article Title: A non-parametric meta-analysis approach for combining independent microarray datasets: application using two microarray datasets pertaining to chronic allograft nephropathy
    Article Snippet: .. For example, the data for a custom spotted cDNA array are usually expressed as ratios of the intensity values corresponding to an experimental sample to the intensity values of a co-hybridized reference sample; while the data from an Affymetrix high density oligonucleotide microarray are absolute intensity values for the single channel. ..

    Article Title: Prognostic Potential and Tumor Growth-Inhibiting Effect of Plasma Advanced Glycation End Products in Non-Small Cell Lung Carcinoma
    Article Snippet: .. For RNA expression analysis, total RNA was isolated with Trizol reagent (Invitrogen), cleaned up (RNeasy Mini Kit; Qiagen, Hilden, Germany) and subjected to high-density oligonucleotide microarray (Affymetrix, Santa Clara, CA, USA) as described previously for human lung tissues ( 29 ) and H358 cells ( 30 ). ..

    Article Title: Discovery of dominant and dormant genes from expression data using a novel generalization of SNR for multi-class problems
    Article Snippet: .. This is also an Affymetrix high-density oligonucleotide microarray data set containing 42 samples from 5 different tumors of the central nervous system (CNS): 10 medulloblastomas (MD), 10 malignant gliomas (MGlio), 10 atypical teratoid/rhabdoid tumors (Rhab), 8 primitive neuro-ectodermal tumors (PNET), and 4 human cerebella tumors (Ncer). ..

    Article Title: DNA methylation markers for metastatic prostate cancer
    Article Snippet: .. In a more specific embodiment, the SNP microarray is the Affymetrix® SNP 6.0 high-density oligonucleotide microarray, wherein the first restriction enzyme is Nsp I and wherein the second restriction enzyme is Sty I. .. In an alternative embodiment, the SNP microarray is the Affymetrix® SNP 6.0 high-density oligonucleotide microarray, wherein the first restriction enzyme is Sty I and wherein the second restriction enzyme is Nsp I.

    Article Title: Sample phenotype clusters in high-density oligonucleotide microarray data sets are revealed using Isomap, a nonlinear algorithm
    Article Snippet: .. Isomap, a nonlinear dimensionality reduction algorithm, discovers low-dimensional structures embedded in high-dimensional Affymetrix high-density oligonucleotide microarray data sets. ..

    RNA Expression:

    Article Title: Prognostic Potential and Tumor Growth-Inhibiting Effect of Plasma Advanced Glycation End Products in Non-Small Cell Lung Carcinoma
    Article Snippet: .. For RNA expression analysis, total RNA was isolated with Trizol reagent (Invitrogen), cleaned up (RNeasy Mini Kit; Qiagen, Hilden, Germany) and subjected to high-density oligonucleotide microarray (Affymetrix, Santa Clara, CA, USA) as described previously for human lung tissues ( 29 ) and H358 cells ( 30 ). ..

    Isolation:

    Article Title: Prognostic Potential and Tumor Growth-Inhibiting Effect of Plasma Advanced Glycation End Products in Non-Small Cell Lung Carcinoma
    Article Snippet: .. For RNA expression analysis, total RNA was isolated with Trizol reagent (Invitrogen), cleaned up (RNeasy Mini Kit; Qiagen, Hilden, Germany) and subjected to high-density oligonucleotide microarray (Affymetrix, Santa Clara, CA, USA) as described previously for human lung tissues ( 29 ) and H358 cells ( 30 ). ..



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