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encode chip-seq data  (Santa Cruz Biotechnology)


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    Santa Cruz Biotechnology encode chip-seq data
    Encode Chip Seq Data, supplied by Santa Cruz Biotechnology, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/encode+chip-seq+data/chip+seq/pmc07109275-65-13-21
    Average 90 stars, based on 1 article reviews
    encode chip-seq data - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Chromatin Immunoprecipitation:

    Article Title: Testing Proximity of Genomic Regions to Transcription Start Sites and Enhancers Complements Gene Set Enrichment Testing
    Article Snippet: We used a total of 90 human ChIP-seq datasets from the Encyclopedia of DNA Elements (ENCODE) at University of California, Santa Cruz ( ; ; ) that consists of 35 TFs over the three Tier 1 cell lines [embryonic stem cells (H1-hESC), B-Lymphocyte (GM12878), and myelogenous leukemia cell (K562)] ( ).

    Article Title: CREB5 Promotes Resistance to Androgen-Receptor Antagonists and Androgen Deprivation in Prostate Cancer
    Article Snippet: AR for ChIP-seq , Santa Cruz , sc-816x.

    Article Title: Astrocyte PERK and IRE1 Signaling Contributes to Morphine Tolerance and Hyperalgesia through Upregulation of Lipocalin-2 and NLRP3 Inflammasome in the Rodent Spinal Cord
    Article Snippet: Reference to the ChIP-seq database of University of California Santa Cruz (UCSC) Gene Browser found that ATF4 was enriched in the promoter regions of LCN2 and TXNIP, suggesting that PERK-driven ATF4 could initiate transcription of LCN2 and TXNIP.

    Article Title: Exploring prognostic potential of long noncoding RNAs in colorectal cancer based on a competing endogenous RNA network
    Article Snippet: Transcription factors (TFs) were identified amongst the clustered gene sets according to the ENCODE CHIP-seq data at the University of California Santa Cruz Genome Browser.

    Article Title: Multi-omic approach identifies a transcriptional network coupling innate immune response to proliferation in the blood of COVID-19 cancer patients
    Article Snippet: Taking advantage of the Genome Browser ChIP-seq databases at the University of California Santa Cruz (UCSC) (ENCODE tracks), we looked for a common binding signature of transcription factors to the promoters of the genes modulated in COVID-19 cancer patients.

    Article Title: RNA Polymerase II-Associated Factor 1 Regulates Stem Cell Features of Pancreatic Cancer Cells, Independently of the PAF1 Complex, via Interactions With PHF5A and DDX3.
    Article Snippet: DAPI, 40,6-diamidino-2-phenylindole. (C) Immunop from SW1990 SP, and immunoblotting was performed for PAF1, CSC and self-renewal markers with depletion of PHF5A in SW1 enrichment of PAF1 and PHF5A on promoters of stem cell ge Santa Cruz genome browser tracks of PAF1 and PHF5A ChIP-Se PAF1 and PHF5A depletion. (H) Immunofluorescence analysis PHF5A.

    Article Title: Testing Proximity of Genomic Regions to Transcription Start Sites and Enhancers Complements Gene Set Enrichment Testing
    Article Snippet: We used a total of 90 human ChIP-seq datasets from the Encyclopedia of DNA Elements (ENCODE) at University of California, Santa Cruz (details found in ).

    Article Title: Defining Essential Enhancers for Pluripotent Stem Cells Using a Features-Oriented CRISPR-Cas9 Screen.
    Article Snippet: Middle panel: ChIP-seq UCSC (University of California, Santa Cruz) browser of pluripotency and architectural proteins, as well as active enhancer marks.

    Binding Assay:

    Article Title: Testing Proximity of Genomic Regions to Transcription Start Sites and Enhancers Complements Gene Set Enrichment Testing
    Article Snippet: We used a total of 90 human ChIP-seq datasets from the Encyclopedia of DNA Elements (ENCODE) at University of California, Santa Cruz ( ; ; ) that consists of 35 TFs over the three Tier 1 cell lines [embryonic stem cells (H1-hESC), B-Lymphocyte (GM12878), and myelogenous leukemia cell (K562)] ( ).

    Article Title: CREB5 Promotes Resistance to Androgen-Receptor Antagonists and Androgen Deprivation in Prostate Cancer
    Article Snippet: AR for ChIP-seq , Santa Cruz , sc-816x.

    Article Title: Astrocyte PERK and IRE1 Signaling Contributes to Morphine Tolerance and Hyperalgesia through Upregulation of Lipocalin-2 and NLRP3 Inflammasome in the Rodent Spinal Cord
    Article Snippet: Reference to the ChIP-seq database of University of California Santa Cruz (UCSC) Gene Browser found that ATF4 was enriched in the promoter regions of LCN2 and TXNIP, suggesting that PERK-driven ATF4 could initiate transcription of LCN2 and TXNIP.

    Article Title: Exploring prognostic potential of long noncoding RNAs in colorectal cancer based on a competing endogenous RNA network
    Article Snippet: Transcription factors (TFs) were identified amongst the clustered gene sets according to the ENCODE CHIP-seq data at the University of California Santa Cruz Genome Browser.

    Article Title: Multi-omic approach identifies a transcriptional network coupling innate immune response to proliferation in the blood of COVID-19 cancer patients
    Article Snippet: Taking advantage of the Genome Browser ChIP-seq databases at the University of California Santa Cruz (UCSC) (ENCODE tracks), we looked for a common binding signature of transcription factors to the promoters of the genes modulated in COVID-19 cancer patients.

    Article Title: RNA Polymerase II-Associated Factor 1 Regulates Stem Cell Features of Pancreatic Cancer Cells, Independently of the PAF1 Complex, via Interactions With PHF5A and DDX3.
    Article Snippet: DAPI, 40,6-diamidino-2-phenylindole. (C) Immunop from SW1990 SP, and immunoblotting was performed for PAF1, CSC and self-renewal markers with depletion of PHF5A in SW1 enrichment of PAF1 and PHF5A on promoters of stem cell ge Santa Cruz genome browser tracks of PAF1 and PHF5A ChIP-Se PAF1 and PHF5A depletion. (H) Immunofluorescence analysis PHF5A.

    Article Title: Testing Proximity of Genomic Regions to Transcription Start Sites and Enhancers Complements Gene Set Enrichment Testing
    Article Snippet: We used a total of 90 human ChIP-seq datasets from the Encyclopedia of DNA Elements (ENCODE) at University of California, Santa Cruz (details found in ).

    Article Title: Defining Essential Enhancers for Pluripotent Stem Cells Using a Features-Oriented CRISPR-Cas9 Screen.
    Article Snippet: Middle panel: ChIP-seq UCSC (University of California, Santa Cruz) browser of pluripotency and architectural proteins, as well as active enhancer marks.

    Control:

    Article Title: Testing Proximity of Genomic Regions to Transcription Start Sites and Enhancers Complements Gene Set Enrichment Testing
    Article Snippet: We used a total of 90 human ChIP-seq datasets from the Encyclopedia of DNA Elements (ENCODE) at University of California, Santa Cruz ( ; ; ) that consists of 35 TFs over the three Tier 1 cell lines [embryonic stem cells (H1-hESC), B-Lymphocyte (GM12878), and myelogenous leukemia cell (K562)] ( ).

    Article Title: CREB5 Promotes Resistance to Androgen-Receptor Antagonists and Androgen Deprivation in Prostate Cancer
    Article Snippet: AR for ChIP-seq , Santa Cruz , sc-816x.

    Article Title: Astrocyte PERK and IRE1 Signaling Contributes to Morphine Tolerance and Hyperalgesia through Upregulation of Lipocalin-2 and NLRP3 Inflammasome in the Rodent Spinal Cord
    Article Snippet: Reference to the ChIP-seq database of University of California Santa Cruz (UCSC) Gene Browser found that ATF4 was enriched in the promoter regions of LCN2 and TXNIP, suggesting that PERK-driven ATF4 could initiate transcription of LCN2 and TXNIP.

    Article Title: Exploring prognostic potential of long noncoding RNAs in colorectal cancer based on a competing endogenous RNA network
    Article Snippet: Transcription factors (TFs) were identified amongst the clustered gene sets according to the ENCODE CHIP-seq data at the University of California Santa Cruz Genome Browser.

    Article Title: Multi-omic approach identifies a transcriptional network coupling innate immune response to proliferation in the blood of COVID-19 cancer patients
    Article Snippet: Taking advantage of the Genome Browser ChIP-seq databases at the University of California Santa Cruz (UCSC) (ENCODE tracks), we looked for a common binding signature of transcription factors to the promoters of the genes modulated in COVID-19 cancer patients.

    Article Title: RNA Polymerase II-Associated Factor 1 Regulates Stem Cell Features of Pancreatic Cancer Cells, Independently of the PAF1 Complex, via Interactions With PHF5A and DDX3.
    Article Snippet: DAPI, 40,6-diamidino-2-phenylindole. (C) Immunop from SW1990 SP, and immunoblotting was performed for PAF1, CSC and self-renewal markers with depletion of PHF5A in SW1 enrichment of PAF1 and PHF5A on promoters of stem cell ge Santa Cruz genome browser tracks of PAF1 and PHF5A ChIP-Se PAF1 and PHF5A depletion. (H) Immunofluorescence analysis PHF5A.

    Article Title: Testing Proximity of Genomic Regions to Transcription Start Sites and Enhancers Complements Gene Set Enrichment Testing
    Article Snippet: We used a total of 90 human ChIP-seq datasets from the Encyclopedia of DNA Elements (ENCODE) at University of California, Santa Cruz (details found in ).

    Article Title: Defining Essential Enhancers for Pluripotent Stem Cells Using a Features-Oriented CRISPR-Cas9 Screen.
    Article Snippet: Middle panel: ChIP-seq UCSC (University of California, Santa Cruz) browser of pluripotency and architectural proteins, as well as active enhancer marks.

    Western Blot:

    Article Title: Testing Proximity of Genomic Regions to Transcription Start Sites and Enhancers Complements Gene Set Enrichment Testing
    Article Snippet: We used a total of 90 human ChIP-seq datasets from the Encyclopedia of DNA Elements (ENCODE) at University of California, Santa Cruz ( ; ; ) that consists of 35 TFs over the three Tier 1 cell lines [embryonic stem cells (H1-hESC), B-Lymphocyte (GM12878), and myelogenous leukemia cell (K562)] ( ).

    Article Title: CREB5 Promotes Resistance to Androgen-Receptor Antagonists and Androgen Deprivation in Prostate Cancer
    Article Snippet: AR for ChIP-seq , Santa Cruz , sc-816x.

    Article Title: Astrocyte PERK and IRE1 Signaling Contributes to Morphine Tolerance and Hyperalgesia through Upregulation of Lipocalin-2 and NLRP3 Inflammasome in the Rodent Spinal Cord
    Article Snippet: Reference to the ChIP-seq database of University of California Santa Cruz (UCSC) Gene Browser found that ATF4 was enriched in the promoter regions of LCN2 and TXNIP, suggesting that PERK-driven ATF4 could initiate transcription of LCN2 and TXNIP.

    Article Title: Exploring prognostic potential of long noncoding RNAs in colorectal cancer based on a competing endogenous RNA network
    Article Snippet: Transcription factors (TFs) were identified amongst the clustered gene sets according to the ENCODE CHIP-seq data at the University of California Santa Cruz Genome Browser.

    Article Title: Multi-omic approach identifies a transcriptional network coupling innate immune response to proliferation in the blood of COVID-19 cancer patients
    Article Snippet: Taking advantage of the Genome Browser ChIP-seq databases at the University of California Santa Cruz (UCSC) (ENCODE tracks), we looked for a common binding signature of transcription factors to the promoters of the genes modulated in COVID-19 cancer patients.

    Article Title: RNA Polymerase II-Associated Factor 1 Regulates Stem Cell Features of Pancreatic Cancer Cells, Independently of the PAF1 Complex, via Interactions With PHF5A and DDX3.
    Article Snippet: DAPI, 40,6-diamidino-2-phenylindole. (C) Immunop from SW1990 SP, and immunoblotting was performed for PAF1, CSC and self-renewal markers with depletion of PHF5A in SW1 enrichment of PAF1 and PHF5A on promoters of stem cell ge Santa Cruz genome browser tracks of PAF1 and PHF5A ChIP-Se PAF1 and PHF5A depletion. (H) Immunofluorescence analysis PHF5A.

    Article Title: Testing Proximity of Genomic Regions to Transcription Start Sites and Enhancers Complements Gene Set Enrichment Testing
    Article Snippet: We used a total of 90 human ChIP-seq datasets from the Encyclopedia of DNA Elements (ENCODE) at University of California, Santa Cruz (details found in ).

    Article Title: Defining Essential Enhancers for Pluripotent Stem Cells Using a Features-Oriented CRISPR-Cas9 Screen.
    Article Snippet: Middle panel: ChIP-seq UCSC (University of California, Santa Cruz) browser of pluripotency and architectural proteins, as well as active enhancer marks.

    Immunofluorescence:

    Article Title: Testing Proximity of Genomic Regions to Transcription Start Sites and Enhancers Complements Gene Set Enrichment Testing
    Article Snippet: We used a total of 90 human ChIP-seq datasets from the Encyclopedia of DNA Elements (ENCODE) at University of California, Santa Cruz ( ; ; ) that consists of 35 TFs over the three Tier 1 cell lines [embryonic stem cells (H1-hESC), B-Lymphocyte (GM12878), and myelogenous leukemia cell (K562)] ( ).

    Article Title: CREB5 Promotes Resistance to Androgen-Receptor Antagonists and Androgen Deprivation in Prostate Cancer
    Article Snippet: AR for ChIP-seq , Santa Cruz , sc-816x.

    Article Title: Astrocyte PERK and IRE1 Signaling Contributes to Morphine Tolerance and Hyperalgesia through Upregulation of Lipocalin-2 and NLRP3 Inflammasome in the Rodent Spinal Cord
    Article Snippet: Reference to the ChIP-seq database of University of California Santa Cruz (UCSC) Gene Browser found that ATF4 was enriched in the promoter regions of LCN2 and TXNIP, suggesting that PERK-driven ATF4 could initiate transcription of LCN2 and TXNIP.

    Article Title: Exploring prognostic potential of long noncoding RNAs in colorectal cancer based on a competing endogenous RNA network
    Article Snippet: Transcription factors (TFs) were identified amongst the clustered gene sets according to the ENCODE CHIP-seq data at the University of California Santa Cruz Genome Browser.

    Article Title: Multi-omic approach identifies a transcriptional network coupling innate immune response to proliferation in the blood of COVID-19 cancer patients
    Article Snippet: Taking advantage of the Genome Browser ChIP-seq databases at the University of California Santa Cruz (UCSC) (ENCODE tracks), we looked for a common binding signature of transcription factors to the promoters of the genes modulated in COVID-19 cancer patients.

    Article Title: RNA Polymerase II-Associated Factor 1 Regulates Stem Cell Features of Pancreatic Cancer Cells, Independently of the PAF1 Complex, via Interactions With PHF5A and DDX3.
    Article Snippet: DAPI, 40,6-diamidino-2-phenylindole. (C) Immunop from SW1990 SP, and immunoblotting was performed for PAF1, CSC and self-renewal markers with depletion of PHF5A in SW1 enrichment of PAF1 and PHF5A on promoters of stem cell ge Santa Cruz genome browser tracks of PAF1 and PHF5A ChIP-Se PAF1 and PHF5A depletion. (H) Immunofluorescence analysis PHF5A.

    Article Title: Testing Proximity of Genomic Regions to Transcription Start Sites and Enhancers Complements Gene Set Enrichment Testing
    Article Snippet: We used a total of 90 human ChIP-seq datasets from the Encyclopedia of DNA Elements (ENCODE) at University of California, Santa Cruz (details found in ).

    Article Title: Defining Essential Enhancers for Pluripotent Stem Cells Using a Features-Oriented CRISPR-Cas9 Screen.
    Article Snippet: Middle panel: ChIP-seq UCSC (University of California, Santa Cruz) browser of pluripotency and architectural proteins, as well as active enhancer marks.



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