encode chip-seq data (Broad Institute Inc)
90
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Broad Institute Inc
encode chip-seq data
Encode Chip Seq Data, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/encode+chip-seq+data/chip+seq+data/pmc03412369-471-1-8
Average 90 stars, based on 1 article reviews
Encode Chip Seq Data, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/encode+chip-seq+data/chip+seq+data/pmc03412369-471-1-8
Average 90 stars, based on 1 article reviews
encode chip-seq data - by Bioz Stars,
2026-09
90/100 stars
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Chromatin Immunoprecipitation:Article Title: Rescuing biologically relevant consensus regions across replicated samples. Article Snippet: Additionally, given the intrinsic noise of the ChIP-seq protocol that leads to artifactual peaks and poor localization of binding loci, peak calling *Correspondence: jvahid@broadinstitute.org; marzia.cremona@fsa.ulaval.ca; fernando.palluzzi@policlinicogemelli.it 1 Broad Institute of MIT and Harvard, Cambridge, MA, USA 2 Department of Operations and Decision Systems, Université Laval, Quebec, Canada 3 CHU de Québec – Université Laval Research Center, Quebec, Canada 4 Department of Brain and Behavioral Sciences, Università di Pavia, Pavia, Italy methods are susceptible to high false-positive rates [2–4]. Article Title: Disease-related blood-based differential methylation in cystic fibrosis and its representation in lung cancer revealed a regulatory locus in PKP3 in lung epithelial cells. Article Snippet: ChIP-seq data from the Broad institute and ENCODE revealed that in lung cells the putatively inflammation-related differentially methylated region may function as an insulator, whereas in other cell-types it may have promoter activity [77– 80]. Article Title: Chromosomal structural rearrangements implicate long non-coding RNAs in rare germline disorders. Article Snippet: These ChIP-seq datasets were generated from seven human cell lines representing a variety of cell types (GM12878 lymphoblastoid cells, H1-hESCs, human skeletal muscle myoblasts, human umbilical vein endothelial cells, K562 chronic myelogenous leukemia cells, normal human epidermal keratinocytes, and normal human lung fibroblasts) by the Bernstein Lab at the Broad Institute. Article Title: Disease-related blood-based differential methylation in cystic fibrosis and its representation in lung cancer revealed a regulatory locus in PKP3 in lung epithelial cells Article Snippet: ChIP-seq data from the Broad institute and ENCODE revealed that in lung cells the putatively inflammation-related differentially methylated region may function as an insulator, whereas in other cell-types it may have promoter activity [ ]. Article Title: Tracking Targets of Dynamic Super-Enhancers in Vitro to Better Characterize Osteoclastogenesis and to Evaluate the Effect of Diuron on the Maturation of Human Bone Cells Article Snippet: Samples were stored at − 80 ° C and sent to ChIP-sequencing (ChIP-Seq) platforms at the Broad Institute (Boston, MA, USA). Article Title: Combinatorial single molecule analysis of chromatin Article Snippet: Calculation of Genomic Coverage by ChIP-Seq. (FIG. 11) ChIP-Seq on mouse ESCs was performed at the Broad Institute as described previously (90). Article Title: Differentially accessible, single copy sequences form contiguous domains along metaphase chromosomes that are conserved among multiple tissues Article Snippet: H3K27ac signal is ChIP-seq data from the GM12878 lymphoblast cell line (Broad Institute). Article Title: Tracking Targets of Dynamic Super-Enhancers <i>in Vitro</i> to Better Characterize Osteoclastogenesis and to Evaluate the Effect of Diuron on the Maturation of Human Bone Cells Article Snippet: Samples were stored at −80 C and sent to ChIP-sequencing (ChIP-Seq) platforms at the Broad Institute (Boston, MA, USA). Generated:Article Title: Rescuing biologically relevant consensus regions across replicated samples. Article Snippet: Additionally, given the intrinsic noise of the ChIP-seq protocol that leads to artifactual peaks and poor localization of binding loci, peak calling *Correspondence: jvahid@broadinstitute.org; marzia.cremona@fsa.ulaval.ca; fernando.palluzzi@policlinicogemelli.it 1 Broad Institute of MIT and Harvard, Cambridge, MA, USA 2 Department of Operations and Decision Systems, Université Laval, Quebec, Canada 3 CHU de Québec – Université Laval Research Center, Quebec, Canada 4 Department of Brain and Behavioral Sciences, Università di Pavia, Pavia, Italy methods are susceptible to high false-positive rates [2–4]. Article Title: Disease-related blood-based differential methylation in cystic fibrosis and its representation in lung cancer revealed a regulatory locus in PKP3 in lung epithelial cells. Article Snippet: ChIP-seq data from the Broad institute and ENCODE revealed that in lung cells the putatively inflammation-related differentially methylated region may function as an insulator, whereas in other cell-types it may have promoter activity [77– 80]. Article Title: Chromosomal structural rearrangements implicate long non-coding RNAs in rare germline disorders. Article Snippet: These ChIP-seq datasets were generated from seven human cell lines representing a variety of cell types (GM12878 lymphoblastoid cells, H1-hESCs, human skeletal muscle myoblasts, human umbilical vein endothelial cells, K562 chronic myelogenous leukemia cells, normal human epidermal keratinocytes, and normal human lung fibroblasts) by the Bernstein Lab at the Broad Institute. Article Title: Disease-related blood-based differential methylation in cystic fibrosis and its representation in lung cancer revealed a regulatory locus in PKP3 in lung epithelial cells Article Snippet: ChIP-seq data from the Broad institute and ENCODE revealed that in lung cells the putatively inflammation-related differentially methylated region may function as an insulator, whereas in other cell-types it may have promoter activity [ ]. Article Title: Tracking Targets of Dynamic Super-Enhancers in Vitro to Better Characterize Osteoclastogenesis and to Evaluate the Effect of Diuron on the Maturation of Human Bone Cells Article Snippet: Samples were stored at − 80 ° C and sent to ChIP-sequencing (ChIP-Seq) platforms at the Broad Institute (Boston, MA, USA). Article Title: Combinatorial single molecule analysis of chromatin Article Snippet: Calculation of Genomic Coverage by ChIP-Seq. (FIG. 11) ChIP-Seq on mouse ESCs was performed at the Broad Institute as described previously (90). Article Title: Differentially accessible, single copy sequences form contiguous domains along metaphase chromosomes that are conserved among multiple tissues Article Snippet: H3K27ac signal is ChIP-seq data from the GM12878 lymphoblast cell line (Broad Institute). Article Title: Tracking Targets of Dynamic Super-Enhancers <i>in Vitro</i> to Better Characterize Osteoclastogenesis and to Evaluate the Effect of Diuron on the Maturation of Human Bone Cells Article Snippet: Samples were stored at −80 C and sent to ChIP-sequencing (ChIP-Seq) platforms at the Broad Institute (Boston, MA, USA). ChIP-sequencing:Article Title: Rescuing biologically relevant consensus regions across replicated samples. Article Snippet: Additionally, given the intrinsic noise of the ChIP-seq protocol that leads to artifactual peaks and poor localization of binding loci, peak calling *Correspondence: jvahid@broadinstitute.org; marzia.cremona@fsa.ulaval.ca; fernando.palluzzi@policlinicogemelli.it 1 Broad Institute of MIT and Harvard, Cambridge, MA, USA 2 Department of Operations and Decision Systems, Université Laval, Quebec, Canada 3 CHU de Québec – Université Laval Research Center, Quebec, Canada 4 Department of Brain and Behavioral Sciences, Università di Pavia, Pavia, Italy methods are susceptible to high false-positive rates [2–4]. Article Title: Disease-related blood-based differential methylation in cystic fibrosis and its representation in lung cancer revealed a regulatory locus in PKP3 in lung epithelial cells. Article Snippet: ChIP-seq data from the Broad institute and ENCODE revealed that in lung cells the putatively inflammation-related differentially methylated region may function as an insulator, whereas in other cell-types it may have promoter activity [77– 80]. Article Title: Chromosomal structural rearrangements implicate long non-coding RNAs in rare germline disorders. Article Snippet: These ChIP-seq datasets were generated from seven human cell lines representing a variety of cell types (GM12878 lymphoblastoid cells, H1-hESCs, human skeletal muscle myoblasts, human umbilical vein endothelial cells, K562 chronic myelogenous leukemia cells, normal human epidermal keratinocytes, and normal human lung fibroblasts) by the Bernstein Lab at the Broad Institute. Article Title: Disease-related blood-based differential methylation in cystic fibrosis and its representation in lung cancer revealed a regulatory locus in PKP3 in lung epithelial cells Article Snippet: ChIP-seq data from the Broad institute and ENCODE revealed that in lung cells the putatively inflammation-related differentially methylated region may function as an insulator, whereas in other cell-types it may have promoter activity [ ]. Article Title: Tracking Targets of Dynamic Super-Enhancers in Vitro to Better Characterize Osteoclastogenesis and to Evaluate the Effect of Diuron on the Maturation of Human Bone Cells Article Snippet: Samples were stored at − 80 ° C and sent to ChIP-sequencing (ChIP-Seq) platforms at the Broad Institute (Boston, MA, USA). Article Title: Combinatorial single molecule analysis of chromatin Article Snippet: Calculation of Genomic Coverage by ChIP-Seq. (FIG. 11) ChIP-Seq on mouse ESCs was performed at the Broad Institute as described previously (90). Article Title: Differentially accessible, single copy sequences form contiguous domains along metaphase chromosomes that are conserved among multiple tissues Article Snippet: H3K27ac signal is ChIP-seq data from the GM12878 lymphoblast cell line (Broad Institute). Article Title: Tracking Targets of Dynamic Super-Enhancers <i>in Vitro</i> to Better Characterize Osteoclastogenesis and to Evaluate the Effect of Diuron on the Maturation of Human Bone Cells Article Snippet: Samples were stored at −80 C and sent to ChIP-sequencing (ChIP-Seq) platforms at the Broad Institute (Boston, MA, USA). Binding Assay:Article Title: Rescuing biologically relevant consensus regions across replicated samples. Article Snippet: Additionally, given the intrinsic noise of the ChIP-seq protocol that leads to artifactual peaks and poor localization of binding loci, peak calling *Correspondence: jvahid@broadinstitute.org; marzia.cremona@fsa.ulaval.ca; fernando.palluzzi@policlinicogemelli.it 1 Broad Institute of MIT and Harvard, Cambridge, MA, USA 2 Department of Operations and Decision Systems, Université Laval, Quebec, Canada 3 CHU de Québec – Université Laval Research Center, Quebec, Canada 4 Department of Brain and Behavioral Sciences, Università di Pavia, Pavia, Italy methods are susceptible to high false-positive rates [2–4]. Article Title: Disease-related blood-based differential methylation in cystic fibrosis and its representation in lung cancer revealed a regulatory locus in PKP3 in lung epithelial cells. Article Snippet: ChIP-seq data from the Broad institute and ENCODE revealed that in lung cells the putatively inflammation-related differentially methylated region may function as an insulator, whereas in other cell-types it may have promoter activity [77– 80]. Article Title: Chromosomal structural rearrangements implicate long non-coding RNAs in rare germline disorders. Article Snippet: These ChIP-seq datasets were generated from seven human cell lines representing a variety of cell types (GM12878 lymphoblastoid cells, H1-hESCs, human skeletal muscle myoblasts, human umbilical vein endothelial cells, K562 chronic myelogenous leukemia cells, normal human epidermal keratinocytes, and normal human lung fibroblasts) by the Bernstein Lab at the Broad Institute. Article Title: Disease-related blood-based differential methylation in cystic fibrosis and its representation in lung cancer revealed a regulatory locus in PKP3 in lung epithelial cells Article Snippet: ChIP-seq data from the Broad institute and ENCODE revealed that in lung cells the putatively inflammation-related differentially methylated region may function as an insulator, whereas in other cell-types it may have promoter activity [ ]. Article Title: Tracking Targets of Dynamic Super-Enhancers in Vitro to Better Characterize Osteoclastogenesis and to Evaluate the Effect of Diuron on the Maturation of Human Bone Cells Article Snippet: Samples were stored at − 80 ° C and sent to ChIP-sequencing (ChIP-Seq) platforms at the Broad Institute (Boston, MA, USA). Article Title: Combinatorial single molecule analysis of chromatin Article Snippet: Calculation of Genomic Coverage by ChIP-Seq. (FIG. 11) ChIP-Seq on mouse ESCs was performed at the Broad Institute as described previously (90). Article Title: Differentially accessible, single copy sequences form contiguous domains along metaphase chromosomes that are conserved among multiple tissues Article Snippet: H3K27ac signal is ChIP-seq data from the GM12878 lymphoblast cell line (Broad Institute). Article Title: Tracking Targets of Dynamic Super-Enhancers <i>in Vitro</i> to Better Characterize Osteoclastogenesis and to Evaluate the Effect of Diuron on the Maturation of Human Bone Cells Article Snippet: Samples were stored at −80 C and sent to ChIP-sequencing (ChIP-Seq) platforms at the Broad Institute (Boston, MA, USA). Methylation:Article Title: Rescuing biologically relevant consensus regions across replicated samples. Article Snippet: Additionally, given the intrinsic noise of the ChIP-seq protocol that leads to artifactual peaks and poor localization of binding loci, peak calling *Correspondence: jvahid@broadinstitute.org; marzia.cremona@fsa.ulaval.ca; fernando.palluzzi@policlinicogemelli.it 1 Broad Institute of MIT and Harvard, Cambridge, MA, USA 2 Department of Operations and Decision Systems, Université Laval, Quebec, Canada 3 CHU de Québec – Université Laval Research Center, Quebec, Canada 4 Department of Brain and Behavioral Sciences, Università di Pavia, Pavia, Italy methods are susceptible to high false-positive rates [2–4]. Article Title: Disease-related blood-based differential methylation in cystic fibrosis and its representation in lung cancer revealed a regulatory locus in PKP3 in lung epithelial cells. Article Snippet: ChIP-seq data from the Broad institute and ENCODE revealed that in lung cells the putatively inflammation-related differentially methylated region may function as an insulator, whereas in other cell-types it may have promoter activity [77– 80]. Article Title: Chromosomal structural rearrangements implicate long non-coding RNAs in rare germline disorders. Article Snippet: These ChIP-seq datasets were generated from seven human cell lines representing a variety of cell types (GM12878 lymphoblastoid cells, H1-hESCs, human skeletal muscle myoblasts, human umbilical vein endothelial cells, K562 chronic myelogenous leukemia cells, normal human epidermal keratinocytes, and normal human lung fibroblasts) by the Bernstein Lab at the Broad Institute. Article Title: Disease-related blood-based differential methylation in cystic fibrosis and its representation in lung cancer revealed a regulatory locus in PKP3 in lung epithelial cells Article Snippet: ChIP-seq data from the Broad institute and ENCODE revealed that in lung cells the putatively inflammation-related differentially methylated region may function as an insulator, whereas in other cell-types it may have promoter activity [ ]. Article Title: Tracking Targets of Dynamic Super-Enhancers in Vitro to Better Characterize Osteoclastogenesis and to Evaluate the Effect of Diuron on the Maturation of Human Bone Cells Article Snippet: Samples were stored at − 80 ° C and sent to ChIP-sequencing (ChIP-Seq) platforms at the Broad Institute (Boston, MA, USA). Article Title: Combinatorial single molecule analysis of chromatin Article Snippet: Calculation of Genomic Coverage by ChIP-Seq. (FIG. 11) ChIP-Seq on mouse ESCs was performed at the Broad Institute as described previously (90). Article Title: Differentially accessible, single copy sequences form contiguous domains along metaphase chromosomes that are conserved among multiple tissues Article Snippet: H3K27ac signal is ChIP-seq data from the GM12878 lymphoblast cell line (Broad Institute). Article Title: Tracking Targets of Dynamic Super-Enhancers <i>in Vitro</i> to Better Characterize Osteoclastogenesis and to Evaluate the Effect of Diuron on the Maturation of Human Bone Cells Article Snippet: Samples were stored at −80 C and sent to ChIP-sequencing (ChIP-Seq) platforms at the Broad Institute (Boston, MA, USA). Activity Assay:Article Title: Rescuing biologically relevant consensus regions across replicated samples. Article Snippet: Additionally, given the intrinsic noise of the ChIP-seq protocol that leads to artifactual peaks and poor localization of binding loci, peak calling *Correspondence: jvahid@broadinstitute.org; marzia.cremona@fsa.ulaval.ca; fernando.palluzzi@policlinicogemelli.it 1 Broad Institute of MIT and Harvard, Cambridge, MA, USA 2 Department of Operations and Decision Systems, Université Laval, Quebec, Canada 3 CHU de Québec – Université Laval Research Center, Quebec, Canada 4 Department of Brain and Behavioral Sciences, Università di Pavia, Pavia, Italy methods are susceptible to high false-positive rates [2–4]. Article Title: Disease-related blood-based differential methylation in cystic fibrosis and its representation in lung cancer revealed a regulatory locus in PKP3 in lung epithelial cells. Article Snippet: ChIP-seq data from the Broad institute and ENCODE revealed that in lung cells the putatively inflammation-related differentially methylated region may function as an insulator, whereas in other cell-types it may have promoter activity [77– 80]. Article Title: Chromosomal structural rearrangements implicate long non-coding RNAs in rare germline disorders. Article Snippet: These ChIP-seq datasets were generated from seven human cell lines representing a variety of cell types (GM12878 lymphoblastoid cells, H1-hESCs, human skeletal muscle myoblasts, human umbilical vein endothelial cells, K562 chronic myelogenous leukemia cells, normal human epidermal keratinocytes, and normal human lung fibroblasts) by the Bernstein Lab at the Broad Institute. Article Title: Disease-related blood-based differential methylation in cystic fibrosis and its representation in lung cancer revealed a regulatory locus in PKP3 in lung epithelial cells Article Snippet: ChIP-seq data from the Broad institute and ENCODE revealed that in lung cells the putatively inflammation-related differentially methylated region may function as an insulator, whereas in other cell-types it may have promoter activity [ ]. Article Title: Tracking Targets of Dynamic Super-Enhancers in Vitro to Better Characterize Osteoclastogenesis and to Evaluate the Effect of Diuron on the Maturation of Human Bone Cells Article Snippet: Samples were stored at − 80 ° C and sent to ChIP-sequencing (ChIP-Seq) platforms at the Broad Institute (Boston, MA, USA). Article Title: Combinatorial single molecule analysis of chromatin Article Snippet: Calculation of Genomic Coverage by ChIP-Seq. (FIG. 11) ChIP-Seq on mouse ESCs was performed at the Broad Institute as described previously (90). Article Title: Differentially accessible, single copy sequences form contiguous domains along metaphase chromosomes that are conserved among multiple tissues Article Snippet: H3K27ac signal is ChIP-seq data from the GM12878 lymphoblast cell line (Broad Institute). Article Title: Tracking Targets of Dynamic Super-Enhancers <i>in Vitro</i> to Better Characterize Osteoclastogenesis and to Evaluate the Effect of Diuron on the Maturation of Human Bone Cells Article Snippet: Samples were stored at −80 C and sent to ChIP-sequencing (ChIP-Seq) platforms at the Broad Institute (Boston, MA, USA). |