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mapping alignment program torrent suite software version 4.4  (Thermo Fisher)


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    Thermo Fisher mapping alignment program torrent suite software version 4.4
    Mapping Alignment Program Torrent Suite Software Version 4.4, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/aligner+software+program/torrent+suite/pmc08822115-121-27-16
    Average 90 stars, based on 1 article reviews
    mapping alignment program torrent suite software version 4.4 - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    other:

    Article Title: Hepatic adenomas in males: Is molecular characterization helpful in guiding its management?
    Article Snippet: Background and aims: Hepatocellular adenomas (HCAs) in males are very rare.. We performed detailed clinicopathologic, immunohistochemical and molecular characterization of HCAs in males, to understand their pathogenesis and malignant potential.. Methods: Seven cases of HCA in males formed our study cohort.

    Article Title: Plasmacytoid Urothelial Carcinoma of the Urinary Bladder: A Single Institution Experience with Focus on Next-Generation Sequencing (NGS) and PD-L1 Immunohistochemistry.
    Article Snippet: The raw signal data were analyzed using Torrent Suite v5.8 (ThermoFisher Scientific) and the short sequence reads were aligned to the human genome reference sequence (GRCh37/hg19) or custom RNA genome.

    Article Title: Enhanced SNP genotyping with symmetric multinomial logistic regression.
    Article Snippet: The primary sequencing analysis was performed with Torrent Suite Software v4.6 (Thermo Fisher Scientific).

    Article Title: Companion Animals as Reservoirs of Multidrug Resistance-A Rare Case of an XDR, NDM-1-Producing Pseudomonas aeruginosa Strain of Feline Origin in Greece.
    Article Snippet: Base calling and demultiplexing of the raw sequencing data were performed in the Torrent Suite 5.10 software (Thermo Scientific, Waltham, MA, USA) using the default parameters.

    Article Title: Comprehensive germline and somatic profiling of high-risk Thai breast cancer via next-generation sequencing.
    Article Snippet: The raw reads were aligned to the GRCh37 reference genome using Torrent Suite software v5.16.1 (Thermo Fisher Scientific).

    Article Title: Short report: Targeted analysis of whole exome sequencing data in Indian cryptogenic stroke patients
    Article Snippet: Sequences were aligned against the reference genome (GRCh37/hg19) using Torrent Suite v.5.12.0 and Variant Caller v.5.2.1 software, including coverage analysis and variant caller plugins (Thermo Fisher Scientific).

    Article Title: Real-time assessment of circulating tumor cells refines the indication for HER2-targeted therapy in metastatic gastric cancer.
    Article Snippet: In brief, WGA of DNA originating from CTC was used for target amplification by Oncomine Tumor Mutation Load Assay that covers 1.7 megabase (Mb) of 409 genes with known cancer associations (Thermo Fisher Scientific).

    Variant Assay:

    Article Title: Arrhythmogenic Cardiomyopathy PKP2 -Related: Clinical and Functional Characterization of a Pathogenic Variant Detected in Two Italian Families.
    Article Snippet: The resultant template of samples was sequenced on the Ion Torrent S5 platform (Thermofisher, Waltham, MA, USA) using the 530 chip. .. Alignment and variant calling were carried out by the Torrent Suite (Thermofisher, Waltham, MA, USA) using as human reference genome the GRCh37/hg19 version. ..



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    Image Search Results


    A phylogenetic tree was generated using consensus hsp65 gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from this study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1H.1, 5H.1, 6H.1, 7H.1, 10H.1, 15H.1, 18H.1, 20H.1, 22H.1, 22H.2, 23H.1, 26H.1, 27H.1, and 27H.2.

    Journal: IJID Regions

    Article Title: Targeted deep sequencing of mycobacteria species from extrapulmonary sites not identified by routine line probe assays: A retrospective laboratory analysis of stored clinical cultures

    doi: 10.1016/j.ijregi.2024.100464

    Figure Lengend Snippet: A phylogenetic tree was generated using consensus hsp65 gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from this study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1H.1, 5H.1, 6H.1, 7H.1, 10H.1, 15H.1, 18H.1, 20H.1, 22H.1, 22H.2, 23H.1, 26H.1, 27H.1, and 27H.2.

    Article Snippet: The consensus sequences were subjected to analysis through the National Centre for Biotechnology Information nucleotide Basic Local Alignment Search Tool software program [ ].

    Techniques: Generated, Amplification, Sequencing, Labeling

    A phylogenetic tree was generated using consensus rpoB gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from the study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1R.1, 2R.1, 6R.1, 8R.1, 9R.1, 10R.1, 10R.2, 10R.3, 10R.4, 10R.5, 15R.1, 16R.1, 18R.1, 20R.1, 21R.1, 22R.1, 23R.1, 24R.1, 26R.1, 27R.1, 28R.1.

    Journal: IJID Regions

    Article Title: Targeted deep sequencing of mycobacteria species from extrapulmonary sites not identified by routine line probe assays: A retrospective laboratory analysis of stored clinical cultures

    doi: 10.1016/j.ijregi.2024.100464

    Figure Lengend Snippet: A phylogenetic tree was generated using consensus rpoB gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from the study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1R.1, 2R.1, 6R.1, 8R.1, 9R.1, 10R.1, 10R.2, 10R.3, 10R.4, 10R.5, 15R.1, 16R.1, 18R.1, 20R.1, 21R.1, 22R.1, 23R.1, 24R.1, 26R.1, 27R.1, 28R.1.

    Article Snippet: The consensus sequences were subjected to analysis through the National Centre for Biotechnology Information nucleotide Basic Local Alignment Search Tool software program [ ].

    Techniques: Generated, Amplification, Sequencing, Labeling