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alignment program in bioedit software  (Bioedit Company)

 
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    Bioedit Company alignment program in bioedit software
    Alignment Program In Bioedit Software, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/aligner+software+program/bioedit+software/pmc09834073-154-2-5
    Average 90 stars, based on 1 article reviews
    alignment program in bioedit software - by Bioz Stars, 2026-09
    90/100 stars

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    other:

    Article Title: Diphyllobothrium stemmacephalum infections in harbor porpoises (Phocoena Phocoena) in German waters
    Article Snippet: Nucleotide sequences were edited and aligned using both forward and reverse sequences with Bioedit (Version 7.2.5.0.0) to create a consensus sequence for BLAST search in GenBank for identification.

    Article Title: First report on the infection of Acanthamoeba and Entamoeba in the endangered Chinese Milu deer ( Elaphurus davidianus ) in China
    Article Snippet: Nucleotide sequences were edited using BioEdit 7.1.3 ( https://www.mbio.ncsu.edu/BioEdit/bioedit.html ) and analyzed by BLASTn against the GenBank database to determine species identity and sequence similarity.

    Article Title: Molecular characterization of indigenous human adenovirus (HAdV) isolate from healthy infant stool sample and screening of its antibodies in archival serum samples in Türkiye
    Article Snippet: The nucleotide sequence was assembled with BioEdit ver 7.2.5 [ ] and compared to the GenBank database.

    Article Title: Morphological and MALDI-TOF MS identification of freshwater snails, including intermediate hosts of schistosomes in Gabon
    Article Snippet: Initially, the sequences were aligned using BioEdit v7.2.5.0 software.

    Article Title: Functional study of FleQ reveals the co-regulation of flgG by rpoN2vemRfleQ operon members in Xanthomonas citri subsp. citri
    Article Snippet: The consensus amino acid positions were generated using BioEdit software.

    Article Title: Multilocus phylogeny and phylogeographical patterns suggest the need for a comprehensive revision of the systematics of Stelliferinae Sasaki, 1989 (Sciaenidae, Acanthuriformes)
    Article Snippet: The sequences were edited using the software Bioedit 5.0.6 and automatically aligned in Clustal W , available in Bioedit.

    Article Title: Arthropod-borne pathogens in European bison Bison bonasus (Linnaeus, 1758)
    Article Snippet: The gene sequencing results were aligned and revised manually using BioEdit v7.0.4 ( ).

    Software:

    Article Title: GC-MS profiling, in vitro and in silico antibacterial and antioxidant potential of crude secondary metabolites of an endophytic bacterium isolated from Enhydra fluctuans lour
    Article Snippet: Using BLAST on the National Center for Biotechnology Information (NCBI) database ( http://www.ncbi.nlm.nih.gov/BLAST ), the consensus alignments from the isolates were examined. .. BioEdit ® software was used for pairwise alignment following manual editing. ..



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    A phylogenetic tree was generated using consensus hsp65 gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from this study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of <t>nucleotide</t> substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1H.1, 5H.1, 6H.1, 7H.1, 10H.1, 15H.1, 18H.1, 20H.1, 22H.1, 22H.2, 23H.1, 26H.1, 27H.1, and 27H.2.
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    Image Search Results


    A phylogenetic tree was generated using consensus hsp65 gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from this study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1H.1, 5H.1, 6H.1, 7H.1, 10H.1, 15H.1, 18H.1, 20H.1, 22H.1, 22H.2, 23H.1, 26H.1, 27H.1, and 27H.2.

    Journal: IJID Regions

    Article Title: Targeted deep sequencing of mycobacteria species from extrapulmonary sites not identified by routine line probe assays: A retrospective laboratory analysis of stored clinical cultures

    doi: 10.1016/j.ijregi.2024.100464

    Figure Lengend Snippet: A phylogenetic tree was generated using consensus hsp65 gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from this study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1H.1, 5H.1, 6H.1, 7H.1, 10H.1, 15H.1, 18H.1, 20H.1, 22H.1, 22H.2, 23H.1, 26H.1, 27H.1, and 27H.2.

    Article Snippet: The consensus sequences were subjected to analysis through the National Centre for Biotechnology Information nucleotide Basic Local Alignment Search Tool software program [ ].

    Techniques: Generated, Amplification, Sequencing, Labeling

    A phylogenetic tree was generated using consensus rpoB gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from the study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1R.1, 2R.1, 6R.1, 8R.1, 9R.1, 10R.1, 10R.2, 10R.3, 10R.4, 10R.5, 15R.1, 16R.1, 18R.1, 20R.1, 21R.1, 22R.1, 23R.1, 24R.1, 26R.1, 27R.1, 28R.1.

    Journal: IJID Regions

    Article Title: Targeted deep sequencing of mycobacteria species from extrapulmonary sites not identified by routine line probe assays: A retrospective laboratory analysis of stored clinical cultures

    doi: 10.1016/j.ijregi.2024.100464

    Figure Lengend Snippet: A phylogenetic tree was generated using consensus rpoB gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from the study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1R.1, 2R.1, 6R.1, 8R.1, 9R.1, 10R.1, 10R.2, 10R.3, 10R.4, 10R.5, 15R.1, 16R.1, 18R.1, 20R.1, 21R.1, 22R.1, 23R.1, 24R.1, 26R.1, 27R.1, 28R.1.

    Article Snippet: The consensus sequences were subjected to analysis through the National Centre for Biotechnology Information nucleotide Basic Local Alignment Search Tool software program [ ].

    Techniques: Generated, Amplification, Sequencing, Labeling