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Bioedit Company sequence alignment editor software program
Sequence Alignment Editor Software Program, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/aligner+software+program/sequence+alignment+editor+software/pmc10892373-124-6-12
Average 90 stars, based on 1 article reviews
sequence alignment editor software program - by Bioz Stars, 2026-09
90/100 stars

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Sequencing:

Article Title: Tetrahymena thermophila glutathione-S-transferase superfamily: an eco-paralogs gene network differentially responding to various environmental abiotic stressors and an update on this gene family in ciliates
Article Snippet: .. Sequence alignments and their percent identities were obtained from the BioEdit Sequence Alignment Editor program ( ). ..

Article Title: Identifying Key Genetic Factors Influencing Reproductive Performance in Dairy and Meat Sheep Breeds of the Mediterranean Region
Article Snippet: The Basic Local Alignment Search Tool (BLAST, https://blast.ncbi.nlm.nih.gov/Blast.cgi ), a resource developed by the National Centre for Biotechnology Information (NCBI) was used to compare the obtained sequences with the genome version ARS‐UI_Ramb _v3.0 (GenBank assembly accession number: GCF_016772045.2). .. Nucleotide sequence alignments and comparisons were carried out using the BioEdit Sequence Alignment Editor software ( http://www.mbio.ncsu.edu/BioEdit/BioEdit.html ). ..

Article Title: Identifying Key Genetic Factors Influencing Reproductive Performance in Dairy and Meat Sheep Breeds of the Mediterranean Region.
Article Snippet: The Basic Local Alignment Search Tool (BLAST, https:// blast. ncbi. nlm. nih. gov/ Blast. cgi), a resource developed by the National Centre for Biotechnology Information (NCBI) was used to compare the obtained sequences with the genome version ARS- UI_Ramb _v3.0 (GenBank assembly accession number: GCF_016772045.2). .. Nucleotide sequence alignments and comparisons were carried out using the BioEdit Sequence Alignment Editor software (http:// www. mbio. ncsu. edu/ BioEd it/ BioEd it. html). ..

Article Title: Potent targeted larvicidal activities of marine-derived Bacillus sp. bacterial extracts on mosquito vectors.
Article Snippet: .. The forward and reverse sequence of 16 s rRNA were trimmed manually by using Bioedit Sequence Alignment Editor Software (Freeware, CA, USA)27. .. Basic Local Alignment Search Tool [BLAST] from National Centre for Biotechnology Information (NCBI) was used to find the identities of the isolates.

Article Title: Antimicrobial Potential of Marine Sponge-Associated Bacillus velezensis and Stutzerimonas stutzeri from the Indian Coast: A Genome Mining and Metabolite Profiling Approach.
Article Snippet: Antimicrobial resistance (AMR) is one of the leading health crises worldwide that demands new antimicrobials to enter the clinical pipeline.. Marine sponges are a rich source of promising bioactive compounds.. Due to their sessile nature and filterfeeding lifestyle, sponges are prone to attack by competitors, predators, and pathogens.

Article Title: Genetic structure of Trichinella britovi populations in wildlife of north and northeast Iran.
Article Snippet: .. The resulting sequences were manually inspected and corrected using the BioEdit Sequencing Alignment Editor software (version 7.0.5) (Hall, 1999). .. The forward and reverse sequences were assembled and checked for ambiguities using CodonCode Aligner software (CodonCode Corp.), and consensus sequences were generated.

Article Title: Potent targeted larvicidal activities of marine-derived Bacillus sp. bacterial extracts on mosquito vectors
Article Snippet: .. The forward and reverse sequence of 16 s rRNA were trimmed manually by using Bioedit Sequence Alignment Editor Software (Freeware, CA, USA) . .. Basic Local Alignment Search Tool [BLAST] from National Centre for Biotechnology Information (NCBI) was used to find the identities of the isolates.

Software:

Article Title: Identifying Key Genetic Factors Influencing Reproductive Performance in Dairy and Meat Sheep Breeds of the Mediterranean Region
Article Snippet: The Basic Local Alignment Search Tool (BLAST, https://blast.ncbi.nlm.nih.gov/Blast.cgi ), a resource developed by the National Centre for Biotechnology Information (NCBI) was used to compare the obtained sequences with the genome version ARS‐UI_Ramb _v3.0 (GenBank assembly accession number: GCF_016772045.2). .. Nucleotide sequence alignments and comparisons were carried out using the BioEdit Sequence Alignment Editor software ( http://www.mbio.ncsu.edu/BioEdit/BioEdit.html ). ..

Article Title: Identifying Key Genetic Factors Influencing Reproductive Performance in Dairy and Meat Sheep Breeds of the Mediterranean Region.
Article Snippet: The Basic Local Alignment Search Tool (BLAST, https:// blast. ncbi. nlm. nih. gov/ Blast. cgi), a resource developed by the National Centre for Biotechnology Information (NCBI) was used to compare the obtained sequences with the genome version ARS- UI_Ramb _v3.0 (GenBank assembly accession number: GCF_016772045.2). .. Nucleotide sequence alignments and comparisons were carried out using the BioEdit Sequence Alignment Editor software (http:// www. mbio. ncsu. edu/ BioEd it/ BioEd it. html). ..

Article Title: Potent targeted larvicidal activities of marine-derived Bacillus sp. bacterial extracts on mosquito vectors.
Article Snippet: .. The forward and reverse sequence of 16 s rRNA were trimmed manually by using Bioedit Sequence Alignment Editor Software (Freeware, CA, USA)27. .. Basic Local Alignment Search Tool [BLAST] from National Centre for Biotechnology Information (NCBI) was used to find the identities of the isolates.

Article Title: Antimicrobial Potential of Marine Sponge-Associated Bacillus velezensis and Stutzerimonas stutzeri from the Indian Coast: A Genome Mining and Metabolite Profiling Approach.
Article Snippet: Antimicrobial resistance (AMR) is one of the leading health crises worldwide that demands new antimicrobials to enter the clinical pipeline.. Marine sponges are a rich source of promising bioactive compounds.. Due to their sessile nature and filterfeeding lifestyle, sponges are prone to attack by competitors, predators, and pathogens.

Article Title: Genetic structure of Trichinella britovi populations in wildlife of north and northeast Iran.
Article Snippet: .. The resulting sequences were manually inspected and corrected using the BioEdit Sequencing Alignment Editor software (version 7.0.5) (Hall, 1999). .. The forward and reverse sequences were assembled and checked for ambiguities using CodonCode Aligner software (CodonCode Corp.), and consensus sequences were generated.

Article Title: Potent targeted larvicidal activities of marine-derived Bacillus sp. bacterial extracts on mosquito vectors
Article Snippet: .. The forward and reverse sequence of 16 s rRNA were trimmed manually by using Bioedit Sequence Alignment Editor Software (Freeware, CA, USA) . .. Basic Local Alignment Search Tool [BLAST] from National Centre for Biotechnology Information (NCBI) was used to find the identities of the isolates.

other:

Article Title: Innovative nucleic acid detection of Clostridioides difficile utilizing the PAM-unconventional, one-step LAMP/CRISPR-Cas12b detection platforms
Article Snippet: To check sequence conservation within the primer design regions, ClustalW multiple sequence alignment (Bioedit Sequence Alignment Editor software, v.7.2.5) was performed on tcdA and tcdB sequences retrieved from the National Center for Biotechnology Information (NCBI) nucleotide database.



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Image Search Results


A phylogenetic tree was generated using consensus hsp65 gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from this study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1H.1, 5H.1, 6H.1, 7H.1, 10H.1, 15H.1, 18H.1, 20H.1, 22H.1, 22H.2, 23H.1, 26H.1, 27H.1, and 27H.2.

Journal: IJID Regions

Article Title: Targeted deep sequencing of mycobacteria species from extrapulmonary sites not identified by routine line probe assays: A retrospective laboratory analysis of stored clinical cultures

doi: 10.1016/j.ijregi.2024.100464

Figure Lengend Snippet: A phylogenetic tree was generated using consensus hsp65 gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from this study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1H.1, 5H.1, 6H.1, 7H.1, 10H.1, 15H.1, 18H.1, 20H.1, 22H.1, 22H.2, 23H.1, 26H.1, 27H.1, and 27H.2.

Article Snippet: The consensus sequences were subjected to analysis through the National Centre for Biotechnology Information nucleotide Basic Local Alignment Search Tool software program [ ].

Techniques: Generated, Amplification, Sequencing, Labeling

A phylogenetic tree was generated using consensus rpoB gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from the study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1R.1, 2R.1, 6R.1, 8R.1, 9R.1, 10R.1, 10R.2, 10R.3, 10R.4, 10R.5, 15R.1, 16R.1, 18R.1, 20R.1, 21R.1, 22R.1, 23R.1, 24R.1, 26R.1, 27R.1, 28R.1.

Journal: IJID Regions

Article Title: Targeted deep sequencing of mycobacteria species from extrapulmonary sites not identified by routine line probe assays: A retrospective laboratory analysis of stored clinical cultures

doi: 10.1016/j.ijregi.2024.100464

Figure Lengend Snippet: A phylogenetic tree was generated using consensus rpoB gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from the study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1R.1, 2R.1, 6R.1, 8R.1, 9R.1, 10R.1, 10R.2, 10R.3, 10R.4, 10R.5, 15R.1, 16R.1, 18R.1, 20R.1, 21R.1, 22R.1, 23R.1, 24R.1, 26R.1, 27R.1, 28R.1.

Article Snippet: The consensus sequences were subjected to analysis through the National Centre for Biotechnology Information nucleotide Basic Local Alignment Search Tool software program [ ].

Techniques: Generated, Amplification, Sequencing, Labeling