We use essential cookies to operate our site. With your consent, we may also use non-essential cookies to improve your user experience and to analyze website traffic. Click "Accept" to accept cookies and go directly to the site, click "Reject" to reject all but cookies strictly necessary for the functioning of this site. You can reset your cookie settings at any time by visiting your Bioz "my account" page and selecting the "reset cookie preferences" link.

Accept Reject

All (2)
Illumina
INFINIUM
 

About 19 products / 53 snippets / 54 images

80 / 100
Bioz Stars
Illumina DNA methylation microarrays
Illumina  
star_border
Techniques
 
Article Snippets
".. Agilent Human CpG Island Microarray [ ] (237,220 CpGs) ( ) and Illumina DNA methylation microarrays, with successive array updates interrogating a broader range and number of CpG .."  (see more)
Biomarker Discovery
SAMP
DNA-METH-A
80 / 100
Bioz Stars
Illumina DNA methylation microarray
Illumina  
star_border
Techniques
 
Article Snippets
".. single gene test based on MALDI-TOF MS is considerably cheaper than Illumina DNA methylation microarray, this interactive detection-prevention measure could be adopted in the clinic. .."  (see more)
50+  more images
Schematic showing the pathway for the application of biomarkers for improved prognostic stratification in prostate cancer patients. Prostate cancer is a heterogeneous disease and identifying those patients at diagnosis that have aggressive vs. indolent disease is critical in informing the clinical management of these patients. Biological sampling includes tissue biopsies, and blood and urine samples. These are assayed using molecular biomarkers, including <t>DNA</t> mutations, DNA <t>methylation</t> and transcription, and clinicopathological markers, such as GS/ISUP grade and tumour staging. The ultimate goal is to improve the prognostic stratification of patients to inform the optimal treatment strategies for prostate cancer patients. TNM: tumour/nodes/metastasis staging; PSA: prostate-specific antigen.
Biomarker Discovery
SAMP
DNA-METH-A
Genes identified by SimPo score to reflect the <t> DNA </t> <t> methylation </t> remodeling in insulin resistance and depression.
Influence of SNPs on probe performance. ( A ) Illustration of the Infinium probe design. Type I probes utilize a pair of methylated (M) and unmethylated (U) probes, designed against the methylated and unmethylated versions of the target <t>DNA,</t> respectively. Signals representing these two alleles are measured in the same color channel, determined by the base incorporated (nucleotides A and T are labeled red, and C labeled green) complementary to the extension base (D = A, T, G in IUPAC code) (top). Type II probes uses a single probe and the extension occurs at the target CpG, with a red-labeled A measuring the unmethylated allele and green-labeled G measuring the methylated allele (middle). For Type I probes, color-chanel-switching (CCS) SNPs at the extension base can cause signals to come from the alternative color channel (bottom). Green and red signals reflect different alleles of the SNP. ( B ) Inter-individual variation (calculated as standard deviations; SDs) in beta values measured by Type I probes associated with a SNP located within the probe at a given distance from the 3΄-end of the probe (the target CpG). Normal samples ( n = 705) studied in the TCGA project were used to calculate the variation. SD was first calculated within each tissue type (to avoid variance introduced by tissue-specific <t>methylation)</t> and averaged over 13 tissue types; ( C ) The averaged SD for beta values measured by Type II probes with a SNP present at a given distance from the 3΄ end of the probe, measured in the normal samples studied in the TCGA project; ( D ) Variation in beta values for Type I probes with CCS SNPs (red), non-channel-switching SNPs (blue) and beta values rescue for CCS SNPs by combining two color channels (green, see ‘Materials and Methods’ section), stratified by minor allele frequency.
METHY
LBLNG
Overview of Illumina <t>DNA</t> <t>methylation</t> microarray probe design and general principles of UMtools. A Probe design and details on how DNA methylation ratios are quantified per Infinium probe type (type I R , type I G , or type II). B Correspondence between DNA methylation ratio (U/(U + M)), U/M plots, and CV logT (≈ σ log(U + M) /μ log(U + M) ) scales. DNA methylation ratio distribution is plotted as a kernel density estimation C U/M plot for a representative example of a 450K control probe targeting a high MAF bi-allelic SNP. Three clusters are formed corresponding to heterozygotes and homozygotes for each allele. D U/M plot for representative examples of sex chromosome-targeting probes. Males and females are highlighted in blue and pink, respectively
DNA-METH-A
MA
CON
×
80 / 100
Bioz Stars
DNA methylation Illumina 27k DNA methylation microarrays
Illumina  
star_border
Techniques
 
Article Snippets
"Genome-wide assessment of DNA methylation Illumina 27k DNA methylation microarrays were also used to profile 3–4 of the same samples from each disease group (control, SCZ, and BD)."  (see more)
80 / 100
Bioz Stars
Illumina Infinium DNA-methylation microarrays
INFINIUM Inc  
star_border
Techniques
 
Article Snippets
".. this letter will serve as a cautionary note for researchers who use Illumina Infinium DNA-methylation microarrays."  (see more)
80 / 100
Bioz Stars
Illumina Infinium DNA-methylation microarrays
Illumina  
star_border
Techniques
 
Article Snippets
".. this letter will serve as a cautionary note for researchers who use Illumina Infinium DNA-methylation microarrays."  (see more)
80 / 100
Bioz Stars
Illumina's DNA methylation microarrays
Illumina  
star_border
Techniques
 
Article Snippets
"Three generations of Illumina's DNA methylation microarrays , including GoldenGate, Infinium Humanmethylation27 (HM27) and most notably, Infinium HumanMethylation450 .."  (see more)
METHY
LBLNG
80 / 100
Bioz Stars
DNA methylation microarrays enable epigenome-wide
Illumina  
star_border
Techniques
 
Article Snippets
"Illumina DNA methylation microarrays enable epigenome-wide analysis vastly used for the discovery of novel DNA methylation variation in health and disease."  (see more)
DNA-METH-A
MA
CON
94 / 100
Bioz Stars
850k Illumina EPIC DNA methylation microarray
Illumina  
star_border
Techniques
 
Article Snippets
".. DNAm reference pro les for 4 major human placental cell populations using the 850k Illumina EPIC DNA methylation microarray, which pro les more than 850,000 CpGs."  (see more)
80 / 100
Bioz Stars
DNA methylation microarray Illumina methylation EPIC BeadChip array
Illumina  
star_border
Techniques
 
Article Snippets
"ATRT, aypical teratoid rhabdoid tumor; EPIC, DNA methylation microarray Illumina methylation EPIC BeadChip array; EPN, ependymoma; ETMR, embryonal tumor with multilayered rosettes; FFPE, .."  (see more)
METHY
qPCR
93 / 100
Bioz Stars
DNA Methylation EPIC BeadChip microarray 850K (Illumina)
INFINIUM Inc  
star_border
Techniques
 
Article Snippets
"Global DNA methylation profile in multistage cutaneous squamous cell carcinoma In this work, we aimed to determine the overall genome DNA methylation profile in human skin from pre- and post-malignant multistage cSCC using the Infinium DNA Methylation EPIC BeadChip .."  (see more)
80 / 100
Bioz Stars
DNA methylation analysis with Illumina Infinium® MethylationEPIC microarrays
Illumina  
star_border
Techniques
 
Article Snippets
"Our DNA methylation analysis with Illumina Infinium® MethylationEPIC microarrays revealed a set of 2579 significant differentially methylated CpG .."  (see more)
94 / 100
Bioz Stars
Human DNA Methylation 450k BeadChip microarray(Illumina)
Illumina  
star_border
Techniques
 
Article Snippets
".. >480,000 CpG sites throughout the genome were measured using the Infinium Human DNA Methylation 450k BeadChip microarray(Illumina) in triplicate, each array representing an independent bisulfite conversion of a .."  (see more)