y22  (DSMZ)

Journal: Genes

Article Title: Genome-Wide Identification and Expression Analysis of Expansin Gene Family in the Storage Root Development of Diploid Wild Sweetpotato Ipomoea trifida

doi: 10.3390/genes13061043

Figure Lengend Snippet: Details of the 37 ItrEXPs in Y22 genome.

Article Snippet: The diploid I. trifida strain Y22, which our group had identified, can produce good SR [ ], is a specific and valuable material for sweetpotato SR research.

Techniques:

Journal: Genes

Article Title: Genome-Wide Identification and Expression Analysis of Expansin Gene Family in the Storage Root Development of Diploid Wild Sweetpotato Ipomoea trifida

doi: 10.3390/genes13061043

Figure Lengend Snippet: Phylogenetic tree of expansin proteins. The phylogenetic tree was constructed by using the sequences of all expansin proteins in Y22 (Itr: 37), I. nil (Ini: 46) , I. triloba (Ilb: 45) and A. thaliana (AT: 35). The genes of the same species are highlighted by the same marker and color. Red stars: Y22, Blue checkmarks: I. nil , Green empty triangles: I. triloba , Orange circles: A. thaliana . The subclass labels I to IX of EXPA are alternately marked with dark green and green.

Article Snippet: The diploid I. trifida strain Y22, which our group had identified, can produce good SR [ ], is a specific and valuable material for sweetpotato SR research.

Techniques: Construct, Marker

Journal: Genes

Article Title: Genome-Wide Identification and Expression Analysis of Expansin Gene Family in the Storage Root Development of Diploid Wild Sweetpotato Ipomoea trifida

doi: 10.3390/genes13061043

Figure Lengend Snippet: Chromosomal distribution and syntenic relationships of Y22 ItrEXPs . ( a ) The syntenic relationships of ItrEXPs in Y22 genome. The Chr0 means the scaffold that is unanchored to the chromosome level. The gray lines show the syntenic regions. The genes located in syntenic regions are marked with red lines; otherwise, they are marked with green lines. ( b – f ) Microsynteny analysis of expansin genes between the Y22 and C. canephora genomes. The expansin genes and their orthologous syntenic genes in C. canephora are linked by red lines, and the others are linked by gray lines. One-to-one, one-to-two, one-to-three, two-to-one and four-to-one syntenic genes between C. canephora and Y22 genomes are shown in ( b ), ( c ), ( d ), ( e ), and ( f ), respectively.

Article Snippet: The diploid I. trifida strain Y22, which our group had identified, can produce good SR [ ], is a specific and valuable material for sweetpotato SR research.

Techniques:

Journal: Genes

Article Title: Genome-Wide Identification and Expression Analysis of Expansin Gene Family in the Storage Root Development of Diploid Wild Sweetpotato Ipomoea trifida

doi: 10.3390/genes13061043

Figure Lengend Snippet: Phylogenetic relationships, motif compositions and gene structure of expansins in Y22. ( a ) Phylogenetic tree of 37 ItrEXPs in Y22. The expansins were classified into α-expansin (ItrEXPA), β-expansin (ItrEXPB), expansin-like A (ItrEXLA) and expansin-like B (ItrEXPB) groups. ( b ) Different motif compositions of ItrEXPs; the conserved motifs are represented by boxes with different colors, and their protein sequences are listed in . ( c ) Gene structure organization of ItrEXPs ; the introns and exons are also marked in the figure.

Article Snippet: The diploid I. trifida strain Y22, which our group had identified, can produce good SR [ ], is a specific and valuable material for sweetpotato SR research.

Techniques:

Journal: Genes

Article Title: Genome-Wide Identification and Expression Analysis of Expansin Gene Family in the Storage Root Development of Diploid Wild Sweetpotato Ipomoea trifida

doi: 10.3390/genes13061043

Figure Lengend Snippet: Expression profiling of ItrEXPs during the SR development of Y22. ( a ) Four typical stages (red arrows) of Y22 SR development. S0, AR stage; S1, ISR stage; S2, YSR stage; S3, MSR stage. Bar = 2 cm. ( b ) Expression patterns of ItrEXPs expressed during SR development. The expression value (RPKM) of expansin genes greater than 1 are showed in the heatmap. ( c ) qRT–PCR results of the randomly selected ItrEXPs .

Article Snippet: The diploid I. trifida strain Y22, which our group had identified, can produce good SR [ ], is a specific and valuable material for sweetpotato SR research.

Techniques: Expressing, Quantitative RT-PCR

Journal: Genes

Article Title: Genome-Wide Identification and Expression Analysis of Expansin Gene Family in the Storage Root Development of Diploid Wild Sweetpotato Ipomoea trifida

doi: 10.3390/genes13061043

Figure Lengend Snippet: The expression of eight ItrEXPs in SR. ( a ) The YSRs of I. trifida (Y22) and sweetpotato cv. Nancy Hall (NH). Red bar, 1 cm. The number represents the SC1, SC2, SC3, SC4 and SC5, respectively. SC1: the outer section of the cortex; SC2: the inner part of the cortex and outermost part of the stele; SC3: the outer part of the stele; SC4: the middle part of the stele; SC5: the inner part of the stele. ( b – i ) The relative expression of ItrEXPA03 , ItrEXPA08 , ItrEXPA15 , ItrEXPB01 , ItrEXLA02 , ItrEXLB05 , ItrEXLB07 and ItrEXLB08 in the SRs of Y22 and NH, respectively.

Article Snippet: The diploid I. trifida strain Y22, which our group had identified, can produce good SR [ ], is a specific and valuable material for sweetpotato SR research.

Techniques: Expressing

Journal: Genes

Article Title: Genome-Wide Identification and Expression Analysis of Expansin Gene Family in the Storage Root Development of Diploid Wild Sweetpotato Ipomoea trifida

doi: 10.3390/genes13061043

Figure Lengend Snippet: Gene expression of development related proteins that interacted with expansins in Y22 SR development. The gene ID of I. trifida (Y22) added later at protein gene name was the protein gene name of I. trifida (Y22).

Article Snippet: The diploid I. trifida strain Y22, which our group had identified, can produce good SR [ ], is a specific and valuable material for sweetpotato SR research.

Techniques: Gene Expression

Journal: Plant Communications

Article Title: Exploring and exploiting genetics and genomics for sweetpotato improvement: Status and perspectives

doi: 10.1016/j.xplc.2022.100332

Figure Lengend Snippet: Genomes and databases for the genus Ipomoea .

Article Snippet: I. trifida , diploid , Y22 , Illumina, PacBio , , 460,931,543 , 607,924 , 5264 , 476.4 , 30,227 , NCBI (PRJNA362521).

Techniques: Sequencing