Virus:Article Title: Antiviral Activity of Essential Oil from Populus balsamifera L. Buds and Its Major Compounds Against Betacoronavirus HCoV-OC43 Using a Sensitive Cytoprotection Assay.
Article Snippet: .. Abbreviations The following abbreviations are used in this manuscript: HSV Herpes Simplex Virus HIV Human Immunodeficiency Virus MEM Minimal Essential Medium Eagle https://doi.org/10.3390/molecules31091496 FBS Fetal Bovine Serum ATCC American Type Culture Collection HBSS Hank’s Balanced Salt Solution PBS Phosphate-Buffered Saline MTC Maximum Tolerated Concentration AUC Area Under the Curve EC50 Half-Maximal Effective Concentration GC-MS Gas Chromatography-Mass Spectrometry GC-FID Gas Chromatrography with Flame Ionization Detection BSL-2 Biosafety Level 2 NHC N4-Hydroxycytidine SSRI Selective Serotonin Reuptake Inhibitor HBV Hepatitis B Virus HCV Hepatitis C Virus PIV-3 Parainfluenza Virus type 3 ..
Article Title: Characterization of a transmembrane-activating STING agonist using genetically humanized mice.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-mouse β-Actin Cell Signaling Technology 5125; RRID: AB_1903890 Anti-mouse/human STING Cell Signaling Technology 13647; RRID: AB_2732796 Anti-mouse phospho-S366 STING Cell Signaling Technology 72971; RRID: AB_2799831 Anti-human phospho-S365 STING Cell Signaling Technology 19781; RRID: AB_2737062 Anti-mouse/human IRF3 Cell Signaling Technology 4302; RRID: AB_1904036 Anti-mouse phospho-S379 IRF3 Cell Signaling Technology 79945; RRID: AB_2799943 Anti-mouse/human TBK1 Cell Signaling Technology 3504; RRID: AB_2255663 Anti-mouse/human phospho-S172 TBK1 Cell Signaling Technology 5483; RRID: AB_10693472 Anti-phospho-S211 TFEB Cell Signaling Technology 37681S; RRID: AB_2799117 Anti-mouse CD3e BD Biosciences 565992; RRID: AB_2738278 Anti-mouse Bcl6 BD Biosciences 563363; RRID: AB_2738159 Anti-mouse CD25 BD Biosciences 564458; RRID: AB_2738814 Anti-mouse MHC-II BD Biosciences 553823; RRID: AB_395006 Anti-mouse CD4 BioLegend 100447; RRID: AB_2564586 Anti-mouse CD45R/B220 BioLegend 103243; RRID: AB_11203907 Anti-mouse PD-1 BioLegend 135205; RRID: AB_1877232 Anti-mouse OX40 BioLegend 119413; RRID: AB_2561723 Anti-mouse CD40 BioLegend 124622; RRID: AB_10897812 Anti-mouse CD80 BioLegend 104722; RRID: AB_2291392 Anti-mouse CD86 BioLegend 105008; RRID: AB_313151 Anti-mouse CD11c BioLegend 117353; RRID: AB_2562010 Anti-mouse PD-1 (in vivo) Bio-X-Cell BE0146; RRID: AB_1877232 Anti-mouse CD8α (in vivo) Bio-X-Cell BE0061; RRID: AB_1125541 Anti-TFEB Bethyl Laboratories A303-673A-T; RRID: AB_11204751 Anti-mouse IgG-HRP Southern Biotech 1030-05; RRID: AB_2619742 Anti-mouse IgG1-HRP Southern Biotech 1070-05; RRID: AB_2650509 Anti-mouse IgG2c-HRP Southern Biotech 1079-05; RRID: AB_2794466 Bacterial and virus strains E. coli BL21 (DE3) Thermo Fisher ECO114 Sendai virus (SeV) Charles River PI-1 CHIKV-nLuc (chikungunya virus) Ahmed et al.65 N/A HSV-1 (KOS strain) ATCC VR-1493 Biological samples Human PBMCs (healthy donors) Martin Memorial Health Systems IRB #083 Human PBMCs (healthy donors) Drexel University College of Medicine IRB #083 Human PBMCs (healthy donors) McGill University Health Centre IRB #083 Chemicals, peptides, and recombinant proteins diABZI MedChemExpress HY-112921B DMXAA ApexBio A8233 Steady GLO Promega E25100 Nano-Glo Promega N1120 Cell Titer Glo Promega G7572 Quanti-Luc InvivoGen rep-qlc4lg1 (Continued on next page) 18 Cell Reports 45, 117475, June 23, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Endotoxin-free ovalbumin InvivoGen vac-pova-100 Ovalbumin peptide library Genscript N/A Alhydrogel aluminum hydroxide InvivoGen vac-alu-250 2’3’ cGAMP InvivoGen tlrl-nacga23-02 ML-RR-S2-CDA (CDA derivative) InvivoGen tlrl-nacda2r-01 Lipofectamine 3000 ThermoFisher Scientific L3000015 LPS Sigma-Aldrich L5293 N,N-dimethylacetamide anhydrous (DMA) Sigma-Aldrich 271012 Polyethylene glycol 400 (PEG) Sigma-Aldrich 91893 GM-CSF (recombinant) Peprotech 315-03 IL-4 (recombinant) Peprotech 214-14 GM-CSF (for human DC culture) Gemini Bio-Products 300-136 IL-4 (for human DC culture) Gemini Bio-Products 300-904 OVA peptide pool (15-mer) Miltenyi Biotec 130-099-771 Concanamycin A Sigma-Aldrich 27689 Polybrene Sigma-Aldrich TR-1003 Critical commercial assays Mouse IFNγ ELISPot kit MabTech 3321-4APW Cytofix/Cytoperm Fixation/ Permeabilization kit BD Biosciences 554722; RRID: AB_2869010 Human Chemokine Panel, 40-Plex Bio-Rad 171AK99MR2 DNA-free RNA isolation kit Zymo Research R2052 3’IVT Express kit Affymetrix 901229 CD14+ monocyte magnetic bead separation kit Stemcell Technologies 19058 Deposited data Transcriptomic data (microarray) Gene Expression Omnibus GEO: GSE302612 Experimental models: Cell lines HEK293T ATCC CRL-3216 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_0063 THF reporter cells Sali et al.52 N/A DC2.4 Millipore SCC142 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_J409 RAW264.7 ATCC TIB-71 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_0493 BHK-21 ATCC CCL-10 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_1915 C6/36 (insect cells) ATCC CRL-1660 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_Z230 Vero cells ATCC CCL-81 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_0059 LentiX cells Takara Bio 632180 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_4401 HEK293T stably expressing STING alleles (WT, HAQ, R232H) This paper N/A (Continued on next page) Cell Reports 45, 117475, June 23, 2026 19
Article Title: Recombinant herpes simplex virus for multiple targeting and use thereof
Article Snippet: .. The HSV-1 KOS strain is available from ATCC (Cat No VR-1493TM), and the entire genome sequence of the strain is completely analyzed and represented in GenBank Accession No. JQ673480.1 (Stuart J. Macdonald et al. Genome Sequence of Herpes Simplex Virus 1 Strain KOS. ..
Article Title: Carbon monoxide-producing probiotic Escherichia coli attenuates HSV-1 skin disease
Article Snippet: Bacillus cereus (NCTC 2599) was provided by the Teaching Laboratory at Pontificia Universidad Católica de Chile. .. Herpes simplex virus type 1 strain KOS (ATCC VR-733) was provided by Dr. Betsy Herold and Dr. Natalia Cheshenko from the Albert Einstein College of Medicine, USA, to Dr. Pablo González, and was prepared as previously described.48 Bacterial isolation and screening for chuS Under sterile conditions, commensal bacteria were isolated from fecal samples of Chilean volunteers, resulting in a total of 401 bacterial isolates from three volunteers. ..
Saline:Article Title: Antiviral Activity of Essential Oil from Populus balsamifera L. Buds and Its Major Compounds Against Betacoronavirus HCoV-OC43 Using a Sensitive Cytoprotection Assay.
Article Snippet: .. Abbreviations The following abbreviations are used in this manuscript: HSV Herpes Simplex Virus HIV Human Immunodeficiency Virus MEM Minimal Essential Medium Eagle https://doi.org/10.3390/molecules31091496 FBS Fetal Bovine Serum ATCC American Type Culture Collection HBSS Hank’s Balanced Salt Solution PBS Phosphate-Buffered Saline MTC Maximum Tolerated Concentration AUC Area Under the Curve EC50 Half-Maximal Effective Concentration GC-MS Gas Chromatography-Mass Spectrometry GC-FID Gas Chromatrography with Flame Ionization Detection BSL-2 Biosafety Level 2 NHC N4-Hydroxycytidine SSRI Selective Serotonin Reuptake Inhibitor HBV Hepatitis B Virus HCV Hepatitis C Virus PIV-3 Parainfluenza Virus type 3 ..
Concentration Assay:Article Title: Antiviral Activity of Essential Oil from Populus balsamifera L. Buds and Its Major Compounds Against Betacoronavirus HCoV-OC43 Using a Sensitive Cytoprotection Assay.
Article Snippet: .. Abbreviations The following abbreviations are used in this manuscript: HSV Herpes Simplex Virus HIV Human Immunodeficiency Virus MEM Minimal Essential Medium Eagle https://doi.org/10.3390/molecules31091496 FBS Fetal Bovine Serum ATCC American Type Culture Collection HBSS Hank’s Balanced Salt Solution PBS Phosphate-Buffered Saline MTC Maximum Tolerated Concentration AUC Area Under the Curve EC50 Half-Maximal Effective Concentration GC-MS Gas Chromatography-Mass Spectrometry GC-FID Gas Chromatrography with Flame Ionization Detection BSL-2 Biosafety Level 2 NHC N4-Hydroxycytidine SSRI Selective Serotonin Reuptake Inhibitor HBV Hepatitis B Virus HCV Hepatitis C Virus PIV-3 Parainfluenza Virus type 3 ..
Gas Chromatography-Mass Spectrometry:Article Title: Antiviral Activity of Essential Oil from Populus balsamifera L. Buds and Its Major Compounds Against Betacoronavirus HCoV-OC43 Using a Sensitive Cytoprotection Assay.
Article Snippet: .. Abbreviations The following abbreviations are used in this manuscript: HSV Herpes Simplex Virus HIV Human Immunodeficiency Virus MEM Minimal Essential Medium Eagle https://doi.org/10.3390/molecules31091496 FBS Fetal Bovine Serum ATCC American Type Culture Collection HBSS Hank’s Balanced Salt Solution PBS Phosphate-Buffered Saline MTC Maximum Tolerated Concentration AUC Area Under the Curve EC50 Half-Maximal Effective Concentration GC-MS Gas Chromatography-Mass Spectrometry GC-FID Gas Chromatrography with Flame Ionization Detection BSL-2 Biosafety Level 2 NHC N4-Hydroxycytidine SSRI Selective Serotonin Reuptake Inhibitor HBV Hepatitis B Virus HCV Hepatitis C Virus PIV-3 Parainfluenza Virus type 3 ..
Activity Assay:
Immunopeptidomics:Article Title: Characterization of a transmembrane-activating STING agonist using genetically humanized mice.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-mouse β-Actin Cell Signaling Technology 5125; RRID: AB_1903890 Anti-mouse/human STING Cell Signaling Technology 13647; RRID: AB_2732796 Anti-mouse phospho-S366 STING Cell Signaling Technology 72971; RRID: AB_2799831 Anti-human phospho-S365 STING Cell Signaling Technology 19781; RRID: AB_2737062 Anti-mouse/human IRF3 Cell Signaling Technology 4302; RRID: AB_1904036 Anti-mouse phospho-S379 IRF3 Cell Signaling Technology 79945; RRID: AB_2799943 Anti-mouse/human TBK1 Cell Signaling Technology 3504; RRID: AB_2255663 Anti-mouse/human phospho-S172 TBK1 Cell Signaling Technology 5483; RRID: AB_10693472 Anti-phospho-S211 TFEB Cell Signaling Technology 37681S; RRID: AB_2799117 Anti-mouse CD3e BD Biosciences 565992; RRID: AB_2738278 Anti-mouse Bcl6 BD Biosciences 563363; RRID: AB_2738159 Anti-mouse CD25 BD Biosciences 564458; RRID: AB_2738814 Anti-mouse MHC-II BD Biosciences 553823; RRID: AB_395006 Anti-mouse CD4 BioLegend 100447; RRID: AB_2564586 Anti-mouse CD45R/B220 BioLegend 103243; RRID: AB_11203907 Anti-mouse PD-1 BioLegend 135205; RRID: AB_1877232 Anti-mouse OX40 BioLegend 119413; RRID: AB_2561723 Anti-mouse CD40 BioLegend 124622; RRID: AB_10897812 Anti-mouse CD80 BioLegend 104722; RRID: AB_2291392 Anti-mouse CD86 BioLegend 105008; RRID: AB_313151 Anti-mouse CD11c BioLegend 117353; RRID: AB_2562010 Anti-mouse PD-1 (in vivo) Bio-X-Cell BE0146; RRID: AB_1877232 Anti-mouse CD8α (in vivo) Bio-X-Cell BE0061; RRID: AB_1125541 Anti-TFEB Bethyl Laboratories A303-673A-T; RRID: AB_11204751 Anti-mouse IgG-HRP Southern Biotech 1030-05; RRID: AB_2619742 Anti-mouse IgG1-HRP Southern Biotech 1070-05; RRID: AB_2650509 Anti-mouse IgG2c-HRP Southern Biotech 1079-05; RRID: AB_2794466 Bacterial and virus strains E. coli BL21 (DE3) Thermo Fisher ECO114 Sendai virus (SeV) Charles River PI-1 CHIKV-nLuc (chikungunya virus) Ahmed et al.65 N/A HSV-1 (KOS strain) ATCC VR-1493 Biological samples Human PBMCs (healthy donors) Martin Memorial Health Systems IRB #083 Human PBMCs (healthy donors) Drexel University College of Medicine IRB #083 Human PBMCs (healthy donors) McGill University Health Centre IRB #083 Chemicals, peptides, and recombinant proteins diABZI MedChemExpress HY-112921B DMXAA ApexBio A8233 Steady GLO Promega E25100 Nano-Glo Promega N1120 Cell Titer Glo Promega G7572 Quanti-Luc InvivoGen rep-qlc4lg1 (Continued on next page) 18 Cell Reports 45, 117475, June 23, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Endotoxin-free ovalbumin InvivoGen vac-pova-100 Ovalbumin peptide library Genscript N/A Alhydrogel aluminum hydroxide InvivoGen vac-alu-250 2’3’ cGAMP InvivoGen tlrl-nacga23-02 ML-RR-S2-CDA (CDA derivative) InvivoGen tlrl-nacda2r-01 Lipofectamine 3000 ThermoFisher Scientific L3000015 LPS Sigma-Aldrich L5293 N,N-dimethylacetamide anhydrous (DMA) Sigma-Aldrich 271012 Polyethylene glycol 400 (PEG) Sigma-Aldrich 91893 GM-CSF (recombinant) Peprotech 315-03 IL-4 (recombinant) Peprotech 214-14 GM-CSF (for human DC culture) Gemini Bio-Products 300-136 IL-4 (for human DC culture) Gemini Bio-Products 300-904 OVA peptide pool (15-mer) Miltenyi Biotec 130-099-771 Concanamycin A Sigma-Aldrich 27689 Polybrene Sigma-Aldrich TR-1003 Critical commercial assays Mouse IFNγ ELISPot kit MabTech 3321-4APW Cytofix/Cytoperm Fixation/ Permeabilization kit BD Biosciences 554722; RRID: AB_2869010 Human Chemokine Panel, 40-Plex Bio-Rad 171AK99MR2 DNA-free RNA isolation kit Zymo Research R2052 3’IVT Express kit Affymetrix 901229 CD14+ monocyte magnetic bead separation kit Stemcell Technologies 19058 Deposited data Transcriptomic data (microarray) Gene Expression Omnibus GEO: GSE302612 Experimental models: Cell lines HEK293T ATCC CRL-3216 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_0063 THF reporter cells Sali et al.52 N/A DC2.4 Millipore SCC142 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_J409 RAW264.7 ATCC TIB-71 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_0493 BHK-21 ATCC CCL-10 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_1915 C6/36 (insect cells) ATCC CRL-1660 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_Z230 Vero cells ATCC CCL-81 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_0059 LentiX cells Takara Bio 632180 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_4401 HEK293T stably expressing STING alleles (WT, HAQ, R232H) This paper N/A (Continued on next page) Cell Reports 45, 117475, June 23, 2026 19
In Vivo:Article Title: Characterization of a transmembrane-activating STING agonist using genetically humanized mice.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-mouse β-Actin Cell Signaling Technology 5125; RRID: AB_1903890 Anti-mouse/human STING Cell Signaling Technology 13647; RRID: AB_2732796 Anti-mouse phospho-S366 STING Cell Signaling Technology 72971; RRID: AB_2799831 Anti-human phospho-S365 STING Cell Signaling Technology 19781; RRID: AB_2737062 Anti-mouse/human IRF3 Cell Signaling Technology 4302; RRID: AB_1904036 Anti-mouse phospho-S379 IRF3 Cell Signaling Technology 79945; RRID: AB_2799943 Anti-mouse/human TBK1 Cell Signaling Technology 3504; RRID: AB_2255663 Anti-mouse/human phospho-S172 TBK1 Cell Signaling Technology 5483; RRID: AB_10693472 Anti-phospho-S211 TFEB Cell Signaling Technology 37681S; RRID: AB_2799117 Anti-mouse CD3e BD Biosciences 565992; RRID: AB_2738278 Anti-mouse Bcl6 BD Biosciences 563363; RRID: AB_2738159 Anti-mouse CD25 BD Biosciences 564458; RRID: AB_2738814 Anti-mouse MHC-II BD Biosciences 553823; RRID: AB_395006 Anti-mouse CD4 BioLegend 100447; RRID: AB_2564586 Anti-mouse CD45R/B220 BioLegend 103243; RRID: AB_11203907 Anti-mouse PD-1 BioLegend 135205; RRID: AB_1877232 Anti-mouse OX40 BioLegend 119413; RRID: AB_2561723 Anti-mouse CD40 BioLegend 124622; RRID: AB_10897812 Anti-mouse CD80 BioLegend 104722; RRID: AB_2291392 Anti-mouse CD86 BioLegend 105008; RRID: AB_313151 Anti-mouse CD11c BioLegend 117353; RRID: AB_2562010 Anti-mouse PD-1 (in vivo) Bio-X-Cell BE0146; RRID: AB_1877232 Anti-mouse CD8α (in vivo) Bio-X-Cell BE0061; RRID: AB_1125541 Anti-TFEB Bethyl Laboratories A303-673A-T; RRID: AB_11204751 Anti-mouse IgG-HRP Southern Biotech 1030-05; RRID: AB_2619742 Anti-mouse IgG1-HRP Southern Biotech 1070-05; RRID: AB_2650509 Anti-mouse IgG2c-HRP Southern Biotech 1079-05; RRID: AB_2794466 Bacterial and virus strains E. coli BL21 (DE3) Thermo Fisher ECO114 Sendai virus (SeV) Charles River PI-1 CHIKV-nLuc (chikungunya virus) Ahmed et al.65 N/A HSV-1 (KOS strain) ATCC VR-1493 Biological samples Human PBMCs (healthy donors) Martin Memorial Health Systems IRB #083 Human PBMCs (healthy donors) Drexel University College of Medicine IRB #083 Human PBMCs (healthy donors) McGill University Health Centre IRB #083 Chemicals, peptides, and recombinant proteins diABZI MedChemExpress HY-112921B DMXAA ApexBio A8233 Steady GLO Promega E25100 Nano-Glo Promega N1120 Cell Titer Glo Promega G7572 Quanti-Luc InvivoGen rep-qlc4lg1 (Continued on next page) 18 Cell Reports 45, 117475, June 23, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Endotoxin-free ovalbumin InvivoGen vac-pova-100 Ovalbumin peptide library Genscript N/A Alhydrogel aluminum hydroxide InvivoGen vac-alu-250 2’3’ cGAMP InvivoGen tlrl-nacga23-02 ML-RR-S2-CDA (CDA derivative) InvivoGen tlrl-nacda2r-01 Lipofectamine 3000 ThermoFisher Scientific L3000015 LPS Sigma-Aldrich L5293 N,N-dimethylacetamide anhydrous (DMA) Sigma-Aldrich 271012 Polyethylene glycol 400 (PEG) Sigma-Aldrich 91893 GM-CSF (recombinant) Peprotech 315-03 IL-4 (recombinant) Peprotech 214-14 GM-CSF (for human DC culture) Gemini Bio-Products 300-136 IL-4 (for human DC culture) Gemini Bio-Products 300-904 OVA peptide pool (15-mer) Miltenyi Biotec 130-099-771 Concanamycin A Sigma-Aldrich 27689 Polybrene Sigma-Aldrich TR-1003 Critical commercial assays Mouse IFNγ ELISPot kit MabTech 3321-4APW Cytofix/Cytoperm Fixation/ Permeabilization kit BD Biosciences 554722; RRID: AB_2869010 Human Chemokine Panel, 40-Plex Bio-Rad 171AK99MR2 DNA-free RNA isolation kit Zymo Research R2052 3’IVT Express kit Affymetrix 901229 CD14+ monocyte magnetic bead separation kit Stemcell Technologies 19058 Deposited data Transcriptomic data (microarray) Gene Expression Omnibus GEO: GSE302612 Experimental models: Cell lines HEK293T ATCC CRL-3216 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_0063 THF reporter cells Sali et al.52 N/A DC2.4 Millipore SCC142 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_J409 RAW264.7 ATCC TIB-71 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_0493 BHK-21 ATCC CCL-10 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_1915 C6/36 (insect cells) ATCC CRL-1660 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_Z230 Vero cells ATCC CCL-81 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_0059 LentiX cells Takara Bio 632180 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_4401 HEK293T stably expressing STING alleles (WT, HAQ, R232H) This paper N/A (Continued on next page) Cell Reports 45, 117475, June 23, 2026 19
Recombinant:Article Title: Characterization of a transmembrane-activating STING agonist using genetically humanized mice.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-mouse β-Actin Cell Signaling Technology 5125; RRID: AB_1903890 Anti-mouse/human STING Cell Signaling Technology 13647; RRID: AB_2732796 Anti-mouse phospho-S366 STING Cell Signaling Technology 72971; RRID: AB_2799831 Anti-human phospho-S365 STING Cell Signaling Technology 19781; RRID: AB_2737062 Anti-mouse/human IRF3 Cell Signaling Technology 4302; RRID: AB_1904036 Anti-mouse phospho-S379 IRF3 Cell Signaling Technology 79945; RRID: AB_2799943 Anti-mouse/human TBK1 Cell Signaling Technology 3504; RRID: AB_2255663 Anti-mouse/human phospho-S172 TBK1 Cell Signaling Technology 5483; RRID: AB_10693472 Anti-phospho-S211 TFEB Cell Signaling Technology 37681S; RRID: AB_2799117 Anti-mouse CD3e BD Biosciences 565992; RRID: AB_2738278 Anti-mouse Bcl6 BD Biosciences 563363; RRID: AB_2738159 Anti-mouse CD25 BD Biosciences 564458; RRID: AB_2738814 Anti-mouse MHC-II BD Biosciences 553823; RRID: AB_395006 Anti-mouse CD4 BioLegend 100447; RRID: AB_2564586 Anti-mouse CD45R/B220 BioLegend 103243; RRID: AB_11203907 Anti-mouse PD-1 BioLegend 135205; RRID: AB_1877232 Anti-mouse OX40 BioLegend 119413; RRID: AB_2561723 Anti-mouse CD40 BioLegend 124622; RRID: AB_10897812 Anti-mouse CD80 BioLegend 104722; RRID: AB_2291392 Anti-mouse CD86 BioLegend 105008; RRID: AB_313151 Anti-mouse CD11c BioLegend 117353; RRID: AB_2562010 Anti-mouse PD-1 (in vivo) Bio-X-Cell BE0146; RRID: AB_1877232 Anti-mouse CD8α (in vivo) Bio-X-Cell BE0061; RRID: AB_1125541 Anti-TFEB Bethyl Laboratories A303-673A-T; RRID: AB_11204751 Anti-mouse IgG-HRP Southern Biotech 1030-05; RRID: AB_2619742 Anti-mouse IgG1-HRP Southern Biotech 1070-05; RRID: AB_2650509 Anti-mouse IgG2c-HRP Southern Biotech 1079-05; RRID: AB_2794466 Bacterial and virus strains E. coli BL21 (DE3) Thermo Fisher ECO114 Sendai virus (SeV) Charles River PI-1 CHIKV-nLuc (chikungunya virus) Ahmed et al.65 N/A HSV-1 (KOS strain) ATCC VR-1493 Biological samples Human PBMCs (healthy donors) Martin Memorial Health Systems IRB #083 Human PBMCs (healthy donors) Drexel University College of Medicine IRB #083 Human PBMCs (healthy donors) McGill University Health Centre IRB #083 Chemicals, peptides, and recombinant proteins diABZI MedChemExpress HY-112921B DMXAA ApexBio A8233 Steady GLO Promega E25100 Nano-Glo Promega N1120 Cell Titer Glo Promega G7572 Quanti-Luc InvivoGen rep-qlc4lg1 (Continued on next page) 18 Cell Reports 45, 117475, June 23, 2026 .. REAGENT or RESOURCE SOURCE IDENTIFIER Endotoxin-free ovalbumin InvivoGen vac-pova-100 Ovalbumin peptide library Genscript N/A Alhydrogel aluminum hydroxide InvivoGen vac-alu-250 2’3’ cGAMP InvivoGen tlrl-nacga23-02 ML-RR-S2-CDA (CDA derivative) InvivoGen tlrl-nacda2r-01 Lipofectamine 3000 ThermoFisher Scientific L3000015 LPS Sigma-Aldrich L5293 N,N-dimethylacetamide anhydrous (DMA) Sigma-Aldrich 271012 Polyethylene glycol 400 (PEG) Sigma-Aldrich 91893 GM-CSF (recombinant) Peprotech 315-03 IL-4 (recombinant) Peprotech 214-14 GM-CSF (for human DC culture) Gemini Bio-Products 300-136 IL-4 (for human DC culture) Gemini Bio-Products 300-904 OVA peptide pool (15-mer) Miltenyi Biotec 130-099-771 Concanamycin A Sigma-Aldrich 27689 Polybrene Sigma-Aldrich TR-1003 Critical commercial assays Mouse IFNγ ELISPot kit MabTech 3321-4APW Cytofix/Cytoperm Fixation/ Permeabilization kit BD Biosciences 554722; RRID: AB_2869010 Human Chemokine Panel, 40-Plex Bio-Rad 171AK99MR2 DNA-free RNA isolation kit Zymo Research R2052 3’IVT Express kit Affymetrix 901229 CD14+ monocyte magnetic bead separation kit Stemcell Technologies 19058 Deposited data Transcriptomic data (microarray) Gene Expression Omnibus GEO: GSE302612 Experimental models: Cell lines HEK293T ATCC CRL-3216 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_0063 THF reporter cells Sali et al.52 N/A DC2.4 Millipore SCC142 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_J409 RAW264.7 ATCC TIB-71 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_0493 BHK-21 ATCC CCL-10 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_1915 C6/36 (insect cells) ATCC CRL-1660 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_Z230 Vero cells ATCC CCL-81 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_0059 LentiX cells Takara Bio 632180 (authenticated by the OHSU Integrated Genomics Core facility); RRID: CVCL_4401 HEK293T stably expressing STING alleles (WT, HAQ, R232H) This paper N/A (Continued on next page) Cell Reports 45, 117475, June 23, 2026 19
Sequencing:Article Title: Recombinant herpes simplex virus for multiple targeting and use thereof
Article Snippet: .. The HSV-1 KOS strain is available from ATCC (Cat No VR-1493TM), and the entire genome sequence of the strain is completely analyzed and represented in GenBank Accession No. JQ673480.1 (Stuart J. Macdonald et al. Genome Sequence of Herpes Simplex Virus 1 Strain KOS. ..
Isolation:Article Title: Carbon monoxide-producing probiotic Escherichia coli attenuates HSV-1 skin disease
Article Snippet: Bacillus cereus (NCTC 2599) was provided by the Teaching Laboratory at Pontificia Universidad Católica de Chile. .. Herpes simplex virus type 1 strain KOS (ATCC VR-733) was provided by Dr. Betsy Herold and Dr. Natalia Cheshenko from the Albert Einstein College of Medicine, USA, to Dr. Pablo González, and was prepared as previously described.48 Bacterial isolation and screening for chuS Under sterile conditions, commensal bacteria were isolated from fecal samples of Chilean volunteers, resulting in a total of 401 bacterial isolates from three volunteers. ..
Sterility:Article Title: Carbon monoxide-producing probiotic Escherichia coli attenuates HSV-1 skin disease
Article Snippet: Bacillus cereus (NCTC 2599) was provided by the Teaching Laboratory at Pontificia Universidad Católica de Chile. .. Herpes simplex virus type 1 strain KOS (ATCC VR-733) was provided by Dr. Betsy Herold and Dr. Natalia Cheshenko from the Albert Einstein College of Medicine, USA, to Dr. Pablo González, and was prepared as previously described.48 Bacterial isolation and screening for chuS Under sterile conditions, commensal bacteria were isolated from fecal samples of Chilean volunteers, resulting in a total of 401 bacterial isolates from three volunteers. ..
Bacteria:Article Title: Carbon monoxide-producing probiotic Escherichia coli attenuates HSV-1 skin disease
Article Snippet: Bacillus cereus (NCTC 2599) was provided by the Teaching Laboratory at Pontificia Universidad Católica de Chile. .. Herpes simplex virus type 1 strain KOS (ATCC VR-733) was provided by Dr. Betsy Herold and Dr. Natalia Cheshenko from the Albert Einstein College of Medicine, USA, to Dr. Pablo González, and was prepared as previously described.48 Bacterial isolation and screening for chuS Under sterile conditions, commensal bacteria were isolated from fecal samples of Chilean volunteers, resulting in a total of 401 bacterial isolates from three volunteers. ..
other:Article Title: SIRPA suppresses integrin-dependent virus endocytosis
Article Snippet: HSV-1 (KOS strain; ATCC VR1493) was grown on Vero E6 cells and propagated as previously described (REF).
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