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org.hs.eg.db package  (RStudio)

 
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    RStudio org.hs.eg.db package
    Org.Hs.Eg.Db Package, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/org%2Ehs%2Eeg%2Edb/org+hs+eg+db/pm39941055-288-6-9
    Average 90 stars, based on 1 article reviews
    org.hs.eg.db package - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Gene Expression:

    Article Title: A bioinformatic analysis of WFDC2 (HE4) expression in high grade serous ovarian cancer reveals tumor-specific changes in metabolic and extracellular matrix gene expression
    Article Snippet: To use clusterProfiler, loading the packages org.Hs.eg.db (v3.11.4), DOSE (V3.14.0), and ggplot2 (v3.3.3) into RStudio (Rv4.0.2) was also necessary [ – ].

    Article Title: Dysregulation of REST and its target genes impacts the fate of neural progenitor cells in down syndrome.
    Article Snippet: We utilised the three packages (org.Hs.eg.db, clusterProfiler and enrichplot) in RStudio software (Version: 2023.03.0 + 386) for GSEA analysis and visualisation.

    Article Title: Dysregulation of REST and its target genes impacts the fate of neural progenitor cells in down syndrome
    Article Snippet: We utilised the three packages ( org.Hs.eg.db , clusterProfiler and enrichplot ) in RStudio software (Version: 2023.03.0 + 386) for GSEA analysis and visualisation.

    Article Title: Organoid-based modeling of platinum resistance identifies KRT17 as both a response mediator and biomarker for targeted therapy in ovarian cancer
    Article Snippet: The output files were analyzed using Rstudio with the following packages, dplyr (1.1.4), tidyverse, (2.0.0), ggrepel (0.9.6), Limma (3.60.6), EnhancedVolcano (1.22.0), clusterProfiler (4.12.6), enrichplot (1.24.4), org.Hs.eg.db (‘3.19.1).

    Article Title: A bioinformatic analysis of WFDC2 (HE4) expression in high grade serous ovarian cancer reveals tumor-specific changes in metabolic and extracellular matrix gene expression.
    Article Snippet: To use clusterProfiler, loading the packages org.Hs.eg.db (v3.11.4), DOSE (V3.14.0), and ggplot2 (v3.3.3) into RStudio (Rv4.0.2) was also necessary [52–55].

    Article Title: Differentially Expressed Genes Reveal the Biomarkers and Molecular Mechanism of Osteonecrosis
    Article Snippet: To explore the regulatory pathways of the aberrant genes, the clusterProfiler, org.Hs.eg.db, and topGO were preloaded in R studio, and the KEGG enrichment was performed for analyzing the relative pathways of the DEGs of three datasets.

    Article Title: Deciphering shared molecular dysregulation across Parkinson’s disease variants using a multi-modal network-based data integration and analysis
    Article Snippet: We used the following methods and packages in RStudio, (with the same settings as for the SNF analysis): enrichPathway and ReactomePA for the Reactome pathway enrichment; enrichGO for the GO biological process enrichment; org.Hs.eg.db and AnnotationDbi::select for the gene ID conversion (between the gene symbol and Entrez id); dotplot for the visualisation of the enrichment results; ggtitle, theme and ggplot2 for the final customised plots of the enrichment results.

    Article Title: Deciphering shared molecular dysregulation across Parkinson's disease variants using a multi-modal network-based data integration and analysis.
    Article Snippet: We used the following methods and packages in RStudio, (with the same settings as for the SNF analysis): • enrichPathway and ReactomePA for the Reactome pathway enrichment; • enrichGO for the GO biological process enrichment; • org.Hs.eg.db and AnnotationDbi::select for the gene ID conversion (between the gene symbol and Entrez id); • dotplot for the visualisation of the enrichment results; • ggtitle, theme and ggplot2 for the final customised plots of the enrichment results.



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