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pab  (ATCC)


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    Structured Review

    ATCC pab
    Comparative diagram of the <t>P.</t> <t>ananatis</t> pan-genome against members of the genomes of representative members of the family Enterobacteriaceae showing that AAB-, IAB- and <t>PAB-specific</t> CDSs are mainly restricted to regions of lower conservation among the Enterobacteriaceae . The P. ananatis pan-genome CDS set was compared by RBBH approach against the CDS sets of 54 members of the family Enterobacteriaceae , which are listed in Additional file : Table S6. Orthologs were considered as those translated CDSs sharing >50% amino acid identity and >70% sequence coverage across the query and hit sequences. Orthologs in each of the enterobacterial comparators are indicated by black arrows The outer circle shows the locations of PAB- (dark green), non-enterobacterial PAB- (light green), IAB- (maroon), AAB- (red), Pantoea- (blue) and P. ananatis -specific (yellow) CDSs on the P. ananatis pan-genome.
    Pab, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 32 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/pab/product/ATCC
    Average 94 stars, based on 32 article reviews
    pab - by Bioz Stars, 2026-02
    94/100 stars

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    1) Product Images from "Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts"

    Article Title: Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts

    Journal: BMC Genomics

    doi: 10.1186/1471-2164-15-404

    Comparative diagram of the P. ananatis pan-genome against members of the genomes of representative members of the family Enterobacteriaceae showing that AAB-, IAB- and PAB-specific CDSs are mainly restricted to regions of lower conservation among the Enterobacteriaceae . The P. ananatis pan-genome CDS set was compared by RBBH approach against the CDS sets of 54 members of the family Enterobacteriaceae , which are listed in Additional file : Table S6. Orthologs were considered as those translated CDSs sharing >50% amino acid identity and >70% sequence coverage across the query and hit sequences. Orthologs in each of the enterobacterial comparators are indicated by black arrows The outer circle shows the locations of PAB- (dark green), non-enterobacterial PAB- (light green), IAB- (maroon), AAB- (red), Pantoea- (blue) and P. ananatis -specific (yellow) CDSs on the P. ananatis pan-genome.
    Figure Legend Snippet: Comparative diagram of the P. ananatis pan-genome against members of the genomes of representative members of the family Enterobacteriaceae showing that AAB-, IAB- and PAB-specific CDSs are mainly restricted to regions of lower conservation among the Enterobacteriaceae . The P. ananatis pan-genome CDS set was compared by RBBH approach against the CDS sets of 54 members of the family Enterobacteriaceae , which are listed in Additional file : Table S6. Orthologs were considered as those translated CDSs sharing >50% amino acid identity and >70% sequence coverage across the query and hit sequences. Orthologs in each of the enterobacterial comparators are indicated by black arrows The outer circle shows the locations of PAB- (dark green), non-enterobacterial PAB- (light green), IAB- (maroon), AAB- (red), Pantoea- (blue) and P. ananatis -specific (yellow) CDSs on the P. ananatis pan-genome.

    Techniques Used: Sequencing

    The T6SS-1 and T6SS-3 loci of P. ananatis encode proteins with orthologs restricted to plant-associated and animal-associated bacteria. The T6SS-3 (A) and T6SS-1 (B) loci of P. ananatis AJ13355 are shown as an example. T6SS core genes with orthologs in both PAB and AAB groups are colored in grey, while PAB- and AAB-specific genes are colored in green and red, respectively. The hcp and vgrG genes are denoted by blue arrows, while the yellow arrow represents a P. ananatis -specific gene.
    Figure Legend Snippet: The T6SS-1 and T6SS-3 loci of P. ananatis encode proteins with orthologs restricted to plant-associated and animal-associated bacteria. The T6SS-3 (A) and T6SS-1 (B) loci of P. ananatis AJ13355 are shown as an example. T6SS core genes with orthologs in both PAB and AAB groups are colored in grey, while PAB- and AAB-specific genes are colored in green and red, respectively. The hcp and vgrG genes are denoted by blue arrows, while the yellow arrow represents a P. ananatis -specific gene.

    Techniques Used: Bacteria



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