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pseudomonas mandelii  (ATCC)


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    Structured Review

    ATCC pseudomonas mandelii
    Pseudomonas Mandelii, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 6 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/700871/Pseudomonas+mandelii+Verhille+et+al/pm34523486-214-16-18
    Average 92 stars, based on 6 article reviews
    pseudomonas mandelii - by Bioz Stars, 2026-10
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    Bacteria:

    Article Title: Expression of mammalian proteins in
    Article Snippet: The host cell can be selected from “Gram-negative Proteobacteria Subgroup 16.” “Gram-negative Proteobacteria Subgroup 16” is defined as the group of Proteobacteria of the following Pseudomonas species (with the ATCC or other deposit numbers of exemplary strain(s) shown in parenthesis): P. abietaniphila (ATCC 700689); P. aeruginosa (ATCC 10145); P. alcaligenes (ATCC 14909); P. anguilliseptica (ATCC 33660); P. citronellolis (ATCC 13674); P. flavescens (ATCC 51555); P. mendocina (ATCC 25411); P. nitroreducens (ATCC 33634); P. oleovorans (ATCC 8062); P. pseudoalcaligenes (ATCC 17440); P. resinovorans (ATCC 14235); P. straminea (ATCC 33636); P. agarici (ATCC 25941); P. alcaliphila; P. alginovora; P. andersonii; P. asplenii (ATCC 23835); P. azelaica (ATCC 27162); P. beijerinckii (ATCC 19372); P. borealis; P. boreopolis (ATCC 33662); P. brassicacearum; P. butanovora (ATCC 43655); P. cellulosa (ATCC 55703); P. aurantiaca (ATCC 33663); P. chlororaphis (ATCC 9446, ATCC 13985, ATCC 17418, ATCC 17461); P. fragi (ATCC 4973); P. lundensis (ATCC 49968); P. taetrolens (ATCC 4683); P. cissicola (ATCC 33616); P. coronafaciens; P. diterpeniphila; P. elongata (ATCC 10144); P. flectens (ATCC 12775); P. azotoformans; P. brenneri; P. cedrella; P. corrugata (ATCC 29736); P. extremorientalis; P. fluorescens (ATCC 35858); P. gessardii; P. libanensis; P. mandelii (ATCC 700871); P. marginalis (ATCC 10844); P. migulae; P. mucidolens (ATCC 4685); P. orientalis; P. rhodesiae; P. synxantha (ATCC 9890); P. tolaasii (ATCC 33618); P. veronii (ATCC 700474); P. frederiksbergensis; P. geniculata (ATCC 19374); P. gingeri; P. graminis; P. grimontii; P. halodenitrificans; P. halophila; P. hibiscicola (ATCC 19867); P. huttiensis (ATCC 14670); P. hydrogenovora; P. jessenii (ATCC 700870); P. kilonensis; P. lanceolata (ATCC 14669); P. lini; P. marginata (ATCC 25417); P. mephitica (ATCC 33665); P. denitrificans (ATCC 19244); P. pertucinogena (ATCC 190); P. pictorum (ATCC 23328); P. psychrophila; P. fulva (ATCC 31418); P. monteilii (ATCC 700476); P. mosselii; P. oryzihabitans (ATCC 43272); P. plecoglossicida (ATCC 700383); P. putida (ATCC 12633); P. reactans; P. spinosa (ATCC 14606); P. balearica; P. luteola (ATCC 43273); P. stutzeri (ATCC 17588); P. amygdali (ATCC 33614); P. avellanae (ATCC 700331); P. caricapapayae (ATCC 33615); P. cichorii (ATCC 10857); P. ficuserectae (ATCC 35104); P. fuscovaginae; P. meliae (ATCC 33050); P. syringae (ATCC 19310); P. viridiflava (ATCC 13223); P. thermocarboxydovorans (ATCC 35961); P. thermotolerans; P. thivervalensis; P. vancouverensis (ATCC 700688); P. wisconsinensis; and P. xiamenensis.

    Article Title: Expression of mammalian proteins in
    Article Snippet: The host cell can be selected from “Gram-negative Proteobacteria Subgroup 16.” “Gram-negative Proteobacteria Subgroup 16” is defined as the group of Proteobacteria of the following Pseudomonas species (with the ATCC or other deposit numbers of exemplary strain(s) shown in parenthesis): P. abietaniphila (ATCC 700689); P. aeruginosa (ATCC 10145); P. alcaligenes (ATCC 14909); P. anguilliseptica (ATCC 33660); P. citronellolis (ATCC 13674); P. flavescens (ATCC 51555); P. mendocina (ATCC 25411); P. nitroreducens (ATCC 33634); P. oleovorans (ATCC 8062); P. pseudoalcaligenes (ATCC 17440); P. resinovorans (ATCC 14235); P. straminea (ATCC 33636); P. agarici (ATCC 25941); P. alcaliphila; P. alginovora; P. andersonii; P. asplenii (ATCC 23835); P. azelaica (ATCC 27162); P. beijerinckii (ATCC 19372); P. borealis; P. boreopolis (ATCC 33662); P. brassicacearum; P. butanovora (ATCC 43655); P. cellulosa (ATCC 55703); P. aurantiaca (ATCC 33663); P. chlororaphis (ATCC 9446, ATCC 13985, ATCC 17418, ATCC 17461); P. fragi (ATCC 4973); P. lundensis (ATCC 49968); P. taetrolens (ATCC 4683); P. cissicola (ATCC 33616); P. coronafaciens; P. diterpeniphila; P. elongata (ATCC 10144); P. flectens (ATCC 12775); P. azotoformans; P. brenneri; P. cedrella; P. corrugata (ATCC 29736); P. extremorientalis; P. fluorescens (ATCC 35858); P. gessardii; P. libanensis; P. mandelii (ATCC 700871); P. marginalis (ATCC 10844); P. migulae; P. mucidolens (ATCC 4685); P. orientalis; P. rhodesiae; P. synxantha (ATCC 9890); P. tolaasii (ATCC 33618); P. veronii (ATCC 700474); P. frederiksbergensis; P. geniculata (ATCC 19374); P. gingeri; P. graminis; P. grimontii; P. halodenitrificans; P. halophila; P. hibiscicola (ATCC 19867); P. huttiensis (ATCC 14670); P. hydrogenovora; P. jessenii (ATCC 700870); P. kilonensis; P. lanceolata (ATCC 14669); P. lini; P. marginata (ATCC 25417); P. mephitica (ATCC 33665); P. denitrificans (ATCC 19244); P. pertucinogena (ATCC 190); P. pictorum (ATCC 23328); P. psychrophila; P. fulva (ATCC 31418); P. monteilii (ATCC 700476); P. mosselii; P. oryzihabitans (ATCC 43272); P. plecoglossicida (ATCC 700383); P. putida (ATCC 12633); P. reactans; P. spinosa (ATCC 14606); P. balearica; P. luteola (ATCC 43273); P. stutzeri (ATCC 17588); P. amygdali (ATCC 33614); P. avellanae (ATCC 700331); P. caricapapayae (ATCC 33615); P. cichorii (ATCC 10857); P. ficuserectae (ATCC 35104); P. fuscovaginae; P. meliae (ATCC 33050); P. syringae (ATCC 19310); P. viridiflava (ATCC 13223); P. thermocarboxydovorans (ATCC 35961); P. thermotolerans; P. thivervalensis; P. vancouverensis (ATCC 700688); P. wisconsinensis; and P. xiamenensis.

    Article Title: Expression of mammalian proteins in
    Article Snippet: The host cell can be selected from “Gram-negative Proteobacteria Subgroup 16.” “Gram-negative Proteobacteria Subgroup 16” is defined as the group of Proteobacteria of the following Pseudomonas species (with the ATCC or other deposit numbers of exemplary strain(s) shown in parenthesis): P. abietaniphila (ATCC 700689); P. aeruginosa (ATCC 10145); P. alcaligenes (ATCC 14909); P. anguilliseptica (ATCC 33660); P. citronellolis (ATCC 13674); P. flavescens (ATCC 51555); P. mendocina (ATCC 25411); P. nitroreducens (ATCC 33634); P. oleovorans (ATCC 8062); P. pseudoalcaligenes (ATCC 17440); P. resinovorans (ATCC 14235); P. straminea (ATCC 33636); P. agarici (ATCC 25941); P. alcaliphila; P. alginovora; P. andersonii; P. asplenii (ATCC 23835); P. azelaica (ATCC 27162); P. beijerinckii (ATCC 19372); P. borealis; P. boreopolis (ATCC 33662); P. brassicacearum; P. butanovora (ATCC 43655); P. cellulosa (ATCC 55703); P. aurantiaca (ATCC 33663); P. chlororaphis (ATCC 9446, ATCC 13985, ATCC 17418, ATCC 17461); P. fragi (ATCC 4973); P. lundensis (ATCC 49968); P. taetrolens (ATCC 4683); P. cissicola (ATCC 33616); P. coronafaciens; P. diterpeniphila; P. elongata (ATCC 10144); P. flectens (ATCC 12775); P. azotoformans; P. brenneri; P. cedrella; P. corrugata (ATCC 29736); P. extremorientalis; P. fluorescens (ATCC 35858); P. gessardii; P. libanensis; P. mandelii (ATCC 700871); P. marginalis (ATCC 10844); P. migulae; P. mucidolens (ATCC 4685); P. orientalis; P. rhodesiae; P. synxantha (ATCC 9890); P. tolaasii (ATCC 33618); P. veronii (ATCC 700474); P. frederiksbergensis; P. geniculata (ATCC 19374); P. gingeri; P. graminis; P. grimontii; P. halodenitrificans; P. halophila; P. hibiscicola (ATCC 19867); P. huttiensis (ATCC 14670); P. hydrogenovora; P. jessenii (ATCC 700870); P. kilonensis; P. lanceolata (ATCC 14669); P. lini; P. marginata (ATCC 25417); P. mephitica (ATCC 33665); P. denitrificans (ATCC 19244); P. pertucinogena (ATCC 190); P. pictorum (ATCC 23328); P. psychrophila; P. fulva (ATCC 31418); P. monteilii (ATCC 700476); P. mosselii; P. oryzihabitans (ATCC 43272); P. plecoglossicida (ATCC 700383); P. putida (ATCC 12633); P. reactans; P. spinosa (ATCC 14606); P. balearica; P. luteola (ATCC 43273); P. stutzeri (ATCC 17588); P. amygdali (ATCC 33614); P. avellanae (ATCC 700331); P. caricapapayae (ATCC 33615); P. cichorii (ATCC 10857); P. ficuserectae (ATCC 35104); P. fuscovaginae; P. meliae (ATCC 33050); P. syringae (ATCC 19310); P. viridifiava (ATCC 13223); P. thermocarboxydovorans (ATCC 35961); P. thermotolerans; P. thivervalensis; P. vancouverensis (ATCC 700688); P. wisconsinensis; and P. xiamenensis.

    Article Title: Taxonomic heterogeneity, as shown by siderotyping, of strains primarily identified as Pseudomonas putida.
    Article Snippet: Source Strain designation Origin Reference INRA-Angers (CFBP) Gardan-Bossis (GB) collection Pseudomonas putida CFBP/GB 11302, 11341, 11342, 11349, 11366, 11370, 11378, 11379, 11384, 11385, 11387, 11388, 11391, 11394, 11395, 11399 Plant rhizosphere (tomato, maize) Bossis (1995) INRA-Angers (CFBP) Gardan-Mattar (GM) collection Pseudomonas putida CFBP/GM 10090, 10096, 11274, 11275, 11277, 11797, 11799.1, 11799.2, 11802, 11804, 11806, 11907, 11908, 11911, 11912, 11916, 11917, 12220 Plant rhizosphere Mattar (1993) INRA-Angers (CFBP) Gardan-Sutra (GS) collection Pseudomonas putida CFBP/GS 12017, 12019, 12048, 12055, 12059, 12062, 12063, 12065, 12070, 12074, 12077, 12081, 12082, 12086, 12087, 12089, 12090, 12091 Plant rhizosphere (banana tree) Sutra et al. (2000) INRA-Dijon Lemanceau collection Pseudomonas putida C-S111, C-S413, C-S215, C-LRp214, D-S1026, D-LR223, D-S824, D-LR228, D-TRP621, D-LE3216, D-S131, D-TR331, D-LRp414, D-LRp212, D-LE611, D-LRp511, D-LE414 J, D-TR1035, D-TE612, D-LE711, D-LRp921, L1 Soil or plant rhizosphere (tomato, flax) Lemanceau et al. (1995); Latour et al. (1996) Faculté de Médecine de Lille (CFML) Pseudomonas putida CFML 90-33, 90-34, 90-40, 90-42, 90-44 to 90-52, 90-72, 90-135, 90-136, 90-138, 90-139; Pseudomonas monteilii CFML 90-54 to 90-63; Pseudomonas mosselii CFML 90-70, 90-71, 90-73 to 90-75, 90-77 to 90-80, 90-82, 90-83T Medical environment; mineral water Elomari et al. (1997); Dabboussi et al. (2002); Verhille et al. (1999) Japan collection Pseudomonas putida A10L, BH, PpG7 (5ATCC 17485), K23-1, KF715, PB4 Miscellaneous Yamamoto & Harayama (1998) Belgium collection Pseudomonas putida PGSB8508, PGSB8301, BW13M1, BW16M1, BW16S1, RW5S2, BW11P1, BW11P2, BW11M1, RW10S1, GR12-2R3 Maize, rice, banana, grass Parret & De Mot (2000) Miscellaneous Pseudomonas putida ATCC 12633T, ATCC 39167, DSM 3601, DSM 3602, MF6313, MFH2-127, PutC, BTP1, BTP16, WCS358, KT2440, 9BW, 10CW, Gwose ATCC and DSM collections; Jacques et al. (1995); Shivaji et al. (1989); Timmis (2002) Reference strains Pseudomonas jessenii CFML 95-307T; Pseudomonas mandelii CFML 95-303T; Pseudomonas fluorescens ATCC 13525T; Pseudomonas sp. A214; Pseudomonas sp. B10 Verhille et al. (1999); Teintze et al. (1981); Buyer et al. (1986) http://ijs.sgmjournals.org 2545 validating the strain grouping was to test the type strains with the pyoverdines that had the same acidic, neutral or alkaline behaviours.

    Article Title: Enzymatic biodegradation of highly p-xylene contaminated soil using cold-active enzymes: A soil column study.
    Article Snippet: Enzymatic bioremediation is a sustainable and environment-friendly method for the clean-up of contaminated soil and water.. In the present study, enzymatic bioremediation was designed using cold-active enzymes (psychrozymes) which catalyze oxidation steps of p-xylene biodegradation in highly contaminated soil (initial concentration of 13,000 mg/kg).. The enzymes were obtained via co-culture of two psychrophilic Pseudomonas strains and characterized by kinetic studies and tandem LC-MS/MS.

    Quantitative RT-PCR:

    Article Title: Expression of mammalian proteins in
    Article Snippet: The host cell can be selected from “Gram-negative Proteobacteria Subgroup 16.” “Gram-negative Proteobacteria Subgroup 16” is defined as the group of Proteobacteria of the following Pseudomonas species (with the ATCC or other deposit numbers of exemplary strain(s) shown in parenthesis): P. abietaniphila (ATCC 700689); P. aeruginosa (ATCC 10145); P. alcaligenes (ATCC 14909); P. anguilliseptica (ATCC 33660); P. citronellolis (ATCC 13674); P. flavescens (ATCC 51555); P. mendocina (ATCC 25411); P. nitroreducens (ATCC 33634); P. oleovorans (ATCC 8062); P. pseudoalcaligenes (ATCC 17440); P. resinovorans (ATCC 14235); P. straminea (ATCC 33636); P. agarici (ATCC 25941); P. alcaliphila; P. alginovora; P. andersonii; P. asplenii (ATCC 23835); P. azelaica (ATCC 27162); P. beijerinckii (ATCC 19372); P. borealis; P. boreopolis (ATCC 33662); P. brassicacearum; P. butanovora (ATCC 43655); P. cellulosa (ATCC 55703); P. aurantiaca (ATCC 33663); P. chlororaphis (ATCC 9446, ATCC 13985, ATCC 17418, ATCC 17461); P. fragi (ATCC 4973); P. lundensis (ATCC 49968); P. taetrolens (ATCC 4683); P. cissicola (ATCC 33616); P. coronafaciens; P. diterpeniphila; P. elongata (ATCC 10144); P. flectens (ATCC 12775); P. azotoformans; P. brenneri; P. cedrella; P. corrugata (ATCC 29736); P. extremorientalis; P. fluorescens (ATCC 35858); P. gessardii; P. libanensis; P. mandelii (ATCC 700871); P. marginalis (ATCC 10844); P. migulae; P. mucidolens (ATCC 4685); P. orientalis; P. rhodesiae; P. synxantha (ATCC 9890); P. tolaasii (ATCC 33618); P. veronii (ATCC 700474); P. frederiksbergensis; P. geniculata (ATCC 19374); P. gingeri; P. graminis; P. grimontii; P. halodenitrificans; P. halophila; P. hibiscicola (ATCC 19867); P. huttiensis (ATCC 14670); P. hydrogenovora; P. jessenii (ATCC 700870); P. kilonensis; P. lanceolata (ATCC 14669); P. lini; P. marginata (ATCC 25417); P. mephitica (ATCC 33665); P. denitrificans (ATCC 19244); P. pertucinogena (ATCC 190); P. pictorum (ATCC 23328); P. psychrophila; P. fulva (ATCC 31418); P. monteilii (ATCC 700476); P. mosselii; P. oryzihabitans (ATCC 43272); P. plecoglossicida (ATCC 700383); P. putida (ATCC 12633); P. reactans; P. spinosa (ATCC 14606); P. balearica; P. luteola (ATCC 43273); P. stutzeri (ATCC 17588); P. amygdali (ATCC 33614); P. avellanae (ATCC 700331); P. caricapapayae (ATCC 33615); P. cichorii (ATCC 10857); P. ficuserectae (ATCC 35104); P. fuscovaginae; P. meliae (ATCC 33050); P. syringae (ATCC 19310); P. viridiflava (ATCC 13223); P. thermocarboxydovorans (ATCC 35961); P. thermotolerans; P. thivervalensis; P. vancouverensis (ATCC 700688); P. wisconsinensis; and P. xiamenensis.

    Article Title: Expression of mammalian proteins in
    Article Snippet: The host cell can be selected from “Gram-negative Proteobacteria Subgroup 16.” “Gram-negative Proteobacteria Subgroup 16” is defined as the group of Proteobacteria of the following Pseudomonas species (with the ATCC or other deposit numbers of exemplary strain(s) shown in parenthesis): P. abietaniphila (ATCC 700689); P. aeruginosa (ATCC 10145); P. alcaligenes (ATCC 14909); P. anguilliseptica (ATCC 33660); P. citronellolis (ATCC 13674); P. flavescens (ATCC 51555); P. mendocina (ATCC 25411); P. nitroreducens (ATCC 33634); P. oleovorans (ATCC 8062); P. pseudoalcaligenes (ATCC 17440); P. resinovorans (ATCC 14235); P. straminea (ATCC 33636); P. agarici (ATCC 25941); P. alcaliphila; P. alginovora; P. andersonii; P. asplenii (ATCC 23835); P. azelaica (ATCC 27162); P. beijerinckii (ATCC 19372); P. borealis; P. boreopolis (ATCC 33662); P. brassicacearum; P. butanovora (ATCC 43655); P. cellulosa (ATCC 55703); P. aurantiaca (ATCC 33663); P. chlororaphis (ATCC 9446, ATCC 13985, ATCC 17418, ATCC 17461); P. fragi (ATCC 4973); P. lundensis (ATCC 49968); P. taetrolens (ATCC 4683); P. cissicola (ATCC 33616); P. coronafaciens; P. diterpeniphila; P. elongata (ATCC 10144); P. flectens (ATCC 12775); P. azotoformans; P. brenneri; P. cedrella; P. corrugata (ATCC 29736); P. extremorientalis; P. fluorescens (ATCC 35858); P. gessardii; P. libanensis; P. mandelii (ATCC 700871); P. marginalis (ATCC 10844); P. migulae; P. mucidolens (ATCC 4685); P. orientalis; P. rhodesiae; P. synxantha (ATCC 9890); P. tolaasii (ATCC 33618); P. veronii (ATCC 700474); P. frederiksbergensis; P. geniculata (ATCC 19374); P. gingeri; P. graminis; P. grimontii; P. halodenitrificans; P. halophila; P. hibiscicola (ATCC 19867); P. huttiensis (ATCC 14670); P. hydrogenovora; P. jessenii (ATCC 700870); P. kilonensis; P. lanceolata (ATCC 14669); P. lini; P. marginata (ATCC 25417); P. mephitica (ATCC 33665); P. denitrificans (ATCC 19244); P. pertucinogena (ATCC 190); P. pictorum (ATCC 23328); P. psychrophila; P. fulva (ATCC 31418); P. monteilii (ATCC 700476); P. mosselii; P. oryzihabitans (ATCC 43272); P. plecoglossicida (ATCC 700383); P. putida (ATCC 12633); P. reactans; P. spinosa (ATCC 14606); P. balearica; P. luteola (ATCC 43273); P. stutzeri (ATCC 17588); P. amygdali (ATCC 33614); P. avellanae (ATCC 700331); P. caricapapayae (ATCC 33615); P. cichorii (ATCC 10857); P. ficuserectae (ATCC 35104); P. fuscovaginae; P. meliae (ATCC 33050); P. syringae (ATCC 19310); P. viridiflava (ATCC 13223); P. thermocarboxydovorans (ATCC 35961); P. thermotolerans; P. thivervalensis; P. vancouverensis (ATCC 700688); P. wisconsinensis; and P. xiamenensis.

    Article Title: Expression of mammalian proteins in
    Article Snippet: The host cell can be selected from “Gram-negative Proteobacteria Subgroup 16.” “Gram-negative Proteobacteria Subgroup 16” is defined as the group of Proteobacteria of the following Pseudomonas species (with the ATCC or other deposit numbers of exemplary strain(s) shown in parenthesis): P. abietaniphila (ATCC 700689); P. aeruginosa (ATCC 10145); P. alcaligenes (ATCC 14909); P. anguilliseptica (ATCC 33660); P. citronellolis (ATCC 13674); P. flavescens (ATCC 51555); P. mendocina (ATCC 25411); P. nitroreducens (ATCC 33634); P. oleovorans (ATCC 8062); P. pseudoalcaligenes (ATCC 17440); P. resinovorans (ATCC 14235); P. straminea (ATCC 33636); P. agarici (ATCC 25941); P. alcaliphila; P. alginovora; P. andersonii; P. asplenii (ATCC 23835); P. azelaica (ATCC 27162); P. beijerinckii (ATCC 19372); P. borealis; P. boreopolis (ATCC 33662); P. brassicacearum; P. butanovora (ATCC 43655); P. cellulosa (ATCC 55703); P. aurantiaca (ATCC 33663); P. chlororaphis (ATCC 9446, ATCC 13985, ATCC 17418, ATCC 17461); P. fragi (ATCC 4973); P. lundensis (ATCC 49968); P. taetrolens (ATCC 4683); P. cissicola (ATCC 33616); P. coronafaciens; P. diterpeniphila; P. elongata (ATCC 10144); P. flectens (ATCC 12775); P. azotoformans; P. brenneri; P. cedrella; P. corrugata (ATCC 29736); P. extremorientalis; P. fluorescens (ATCC 35858); P. gessardii; P. libanensis; P. mandelii (ATCC 700871); P. marginalis (ATCC 10844); P. migulae; P. mucidolens (ATCC 4685); P. orientalis; P. rhodesiae; P. synxantha (ATCC 9890); P. tolaasii (ATCC 33618); P. veronii (ATCC 700474); P. frederiksbergensis; P. geniculata (ATCC 19374); P. gingeri; P. graminis; P. grimontii; P. halodenitrificans; P. halophila; P. hibiscicola (ATCC 19867); P. huttiensis (ATCC 14670); P. hydrogenovora; P. jessenii (ATCC 700870); P. kilonensis; P. lanceolata (ATCC 14669); P. lini; P. marginata (ATCC 25417); P. mephitica (ATCC 33665); P. denitrificans (ATCC 19244); P. pertucinogena (ATCC 190); P. pictorum (ATCC 23328); P. psychrophila; P. fulva (ATCC 31418); P. monteilii (ATCC 700476); P. mosselii; P. oryzihabitans (ATCC 43272); P. plecoglossicida (ATCC 700383); P. putida (ATCC 12633); P. reactans; P. spinosa (ATCC 14606); P. balearica; P. luteola (ATCC 43273); P. stutzeri (ATCC 17588); P. amygdali (ATCC 33614); P. avellanae (ATCC 700331); P. caricapapayae (ATCC 33615); P. cichorii (ATCC 10857); P. ficuserectae (ATCC 35104); P. fuscovaginae; P. meliae (ATCC 33050); P. syringae (ATCC 19310); P. viridifiava (ATCC 13223); P. thermocarboxydovorans (ATCC 35961); P. thermotolerans; P. thivervalensis; P. vancouverensis (ATCC 700688); P. wisconsinensis; and P. xiamenensis.

    Article Title: Taxonomic heterogeneity, as shown by siderotyping, of strains primarily identified as Pseudomonas putida.
    Article Snippet: Source Strain designation Origin Reference INRA-Angers (CFBP) Gardan-Bossis (GB) collection Pseudomonas putida CFBP/GB 11302, 11341, 11342, 11349, 11366, 11370, 11378, 11379, 11384, 11385, 11387, 11388, 11391, 11394, 11395, 11399 Plant rhizosphere (tomato, maize) Bossis (1995) INRA-Angers (CFBP) Gardan-Mattar (GM) collection Pseudomonas putida CFBP/GM 10090, 10096, 11274, 11275, 11277, 11797, 11799.1, 11799.2, 11802, 11804, 11806, 11907, 11908, 11911, 11912, 11916, 11917, 12220 Plant rhizosphere Mattar (1993) INRA-Angers (CFBP) Gardan-Sutra (GS) collection Pseudomonas putida CFBP/GS 12017, 12019, 12048, 12055, 12059, 12062, 12063, 12065, 12070, 12074, 12077, 12081, 12082, 12086, 12087, 12089, 12090, 12091 Plant rhizosphere (banana tree) Sutra et al. (2000) INRA-Dijon Lemanceau collection Pseudomonas putida C-S111, C-S413, C-S215, C-LRp214, D-S1026, D-LR223, D-S824, D-LR228, D-TRP621, D-LE3216, D-S131, D-TR331, D-LRp414, D-LRp212, D-LE611, D-LRp511, D-LE414 J, D-TR1035, D-TE612, D-LE711, D-LRp921, L1 Soil or plant rhizosphere (tomato, flax) Lemanceau et al. (1995); Latour et al. (1996) Faculté de Médecine de Lille (CFML) Pseudomonas putida CFML 90-33, 90-34, 90-40, 90-42, 90-44 to 90-52, 90-72, 90-135, 90-136, 90-138, 90-139; Pseudomonas monteilii CFML 90-54 to 90-63; Pseudomonas mosselii CFML 90-70, 90-71, 90-73 to 90-75, 90-77 to 90-80, 90-82, 90-83T Medical environment; mineral water Elomari et al. (1997); Dabboussi et al. (2002); Verhille et al. (1999) Japan collection Pseudomonas putida A10L, BH, PpG7 (5ATCC 17485), K23-1, KF715, PB4 Miscellaneous Yamamoto & Harayama (1998) Belgium collection Pseudomonas putida PGSB8508, PGSB8301, BW13M1, BW16M1, BW16S1, RW5S2, BW11P1, BW11P2, BW11M1, RW10S1, GR12-2R3 Maize, rice, banana, grass Parret & De Mot (2000) Miscellaneous Pseudomonas putida ATCC 12633T, ATCC 39167, DSM 3601, DSM 3602, MF6313, MFH2-127, PutC, BTP1, BTP16, WCS358, KT2440, 9BW, 10CW, Gwose ATCC and DSM collections; Jacques et al. (1995); Shivaji et al. (1989); Timmis (2002) Reference strains Pseudomonas jessenii CFML 95-307T; Pseudomonas mandelii CFML 95-303T; Pseudomonas fluorescens ATCC 13525T; Pseudomonas sp. A214; Pseudomonas sp. B10 Verhille et al. (1999); Teintze et al. (1981); Buyer et al. (1986) http://ijs.sgmjournals.org 2545 validating the strain grouping was to test the type strains with the pyoverdines that had the same acidic, neutral or alkaline behaviours.

    Article Title: Enzymatic biodegradation of highly p-xylene contaminated soil using cold-active enzymes: A soil column study.
    Article Snippet: Enzymatic bioremediation is a sustainable and environment-friendly method for the clean-up of contaminated soil and water.. In the present study, enzymatic bioremediation was designed using cold-active enzymes (psychrozymes) which catalyze oxidation steps of p-xylene biodegradation in highly contaminated soil (initial concentration of 13,000 mg/kg).. The enzymes were obtained via co-culture of two psychrophilic Pseudomonas strains and characterized by kinetic studies and tandem LC-MS/MS.



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    Phylogenetic analysis of XenA38 ( a ), XenA45 ( b ) and XenA205 ( c ) proteins from Pseudomonas mandelii 7HK4 bacteria. Neighbor joining analyses were performed on the closest homologues with or without known structures and/or function. The numbers on the nodes indicate how often (no. of times, %) the species to the right grouped together in 1000 bootstrap samples. Bars represent the number of amino acid substitutions per site. UniProt/PDB accession numbers are given in parentheses. Proteins with known structure and/or function are marked with an asterix (*).

    Journal: International Journal of Molecular Sciences

    Article Title: The First Step of Biodegradation of 7-Hydroxycoumarin in Pseudomonas mandelii 7HK4 Depends on an Alcohol Dehydrogenase-Type Enzyme

    doi: 10.3390/ijms22041552

    Figure Lengend Snippet: Phylogenetic analysis of XenA38 ( a ), XenA45 ( b ) and XenA205 ( c ) proteins from Pseudomonas mandelii 7HK4 bacteria. Neighbor joining analyses were performed on the closest homologues with or without known structures and/or function. The numbers on the nodes indicate how often (no. of times, %) the species to the right grouped together in 1000 bootstrap samples. Bars represent the number of amino acid substitutions per site. UniProt/PDB accession numbers are given in parentheses. Proteins with known structure and/or function are marked with an asterix (*).

    Article Snippet: Our results show that the reduction of 7-hydroxycoumarin in Pseudomonas mandelii 7HK4 involves a similar approach such as in the previously characterized coumarin catabolic routes in Pseudomonas sp. 30–1 and Aspergillus niger ATCC 11394 [ , ].

    Techniques: Bacteria

    Quantitative RT-PCR analysis of Pseudomonas mandelii 7HK4 transcripts. Strain 7HK4 was cultivated in minimal medium supplemented with either 1 mM coumarin derivative (induced conditions) or glucose (noninduced condition) as a single source of carbon. ( a ) qPCR analysis of the transcription of xenA38 and xenA45 genes. ( b ) qPCR analysis of the transcription of hcdABCR , hp4, hcdD and hcdE genes. Primers were designed to amplify the regions of corresponding genes . The data are presented as relative RNA amounts calculated from the threshold cycles using the threshold cycle of 16S RNA as a reference. The averages of three independent runs are presented. GLC—glucose; KUM—coumarin; 6HK—6-hydroxycoumarin; 7HK—7-hydroxycoumarin; 6MK—6-methylcoumarin; 7MK—7-methylcoumarin; 67DHK—6,7-dihydroxycoumarin; DHFP—3-(2,4-dihydroxyphenyl)propionic acid. ( c ) Organization of hcdABC and its adjacent genes in P. mandelii 7HK4 bacteria. The black arrows indicate previously described ORFs encoding HcdA, HcdB, HcdC and grey arrows indicate hcdDEFG genes studied in this work and ORFs encoding hypothetical proteins (hp).

    Journal: International Journal of Molecular Sciences

    Article Title: The First Step of Biodegradation of 7-Hydroxycoumarin in Pseudomonas mandelii 7HK4 Depends on an Alcohol Dehydrogenase-Type Enzyme

    doi: 10.3390/ijms22041552

    Figure Lengend Snippet: Quantitative RT-PCR analysis of Pseudomonas mandelii 7HK4 transcripts. Strain 7HK4 was cultivated in minimal medium supplemented with either 1 mM coumarin derivative (induced conditions) or glucose (noninduced condition) as a single source of carbon. ( a ) qPCR analysis of the transcription of xenA38 and xenA45 genes. ( b ) qPCR analysis of the transcription of hcdABCR , hp4, hcdD and hcdE genes. Primers were designed to amplify the regions of corresponding genes . The data are presented as relative RNA amounts calculated from the threshold cycles using the threshold cycle of 16S RNA as a reference. The averages of three independent runs are presented. GLC—glucose; KUM—coumarin; 6HK—6-hydroxycoumarin; 7HK—7-hydroxycoumarin; 6MK—6-methylcoumarin; 7MK—7-methylcoumarin; 67DHK—6,7-dihydroxycoumarin; DHFP—3-(2,4-dihydroxyphenyl)propionic acid. ( c ) Organization of hcdABC and its adjacent genes in P. mandelii 7HK4 bacteria. The black arrows indicate previously described ORFs encoding HcdA, HcdB, HcdC and grey arrows indicate hcdDEFG genes studied in this work and ORFs encoding hypothetical proteins (hp).

    Article Snippet: Our results show that the reduction of 7-hydroxycoumarin in Pseudomonas mandelii 7HK4 involves a similar approach such as in the previously characterized coumarin catabolic routes in Pseudomonas sp. 30–1 and Aspergillus niger ATCC 11394 [ , ].

    Techniques: Quantitative RT-PCR, Bacteria

    Phylogenetic tree of HcdE protein from Pseudomonas mandelii 7HK4 bacteria. Neighbor joining analyses were performed on the closest homologues with or without known structures and/or function. The numbers on the nodes indicate how often (no. of times, %) the species to the right grouped together in 1000 bootstrap samples. Bars represent the number of amino acid substitutions per site. UniProt/PDB accession numbers are given in parentheses. Proteins with known structure and/or function are marked with an asterix (*).

    Journal: International Journal of Molecular Sciences

    Article Title: The First Step of Biodegradation of 7-Hydroxycoumarin in Pseudomonas mandelii 7HK4 Depends on an Alcohol Dehydrogenase-Type Enzyme

    doi: 10.3390/ijms22041552

    Figure Lengend Snippet: Phylogenetic tree of HcdE protein from Pseudomonas mandelii 7HK4 bacteria. Neighbor joining analyses were performed on the closest homologues with or without known structures and/or function. The numbers on the nodes indicate how often (no. of times, %) the species to the right grouped together in 1000 bootstrap samples. Bars represent the number of amino acid substitutions per site. UniProt/PDB accession numbers are given in parentheses. Proteins with known structure and/or function are marked with an asterix (*).

    Article Snippet: Our results show that the reduction of 7-hydroxycoumarin in Pseudomonas mandelii 7HK4 involves a similar approach such as in the previously characterized coumarin catabolic routes in Pseudomonas sp. 30–1 and Aspergillus niger ATCC 11394 [ , ].

    Techniques: Bacteria

    The proposed catabolic pathway of 7-hydroxycoumarin in Pseudomonas sp. 7HK4 bacteria. 1 —7-hydroxycoumarin; 2 —7-hydroxy-3,4-dihydrocoumarin; 3 —3-(2,4-dihydroxyphenyl)propionic acid; 4 —3-(2,3,5-trihydroxyphenyl)propionic acid; 5 —(2 E ,4 E )-2,4-dihydroxy-6-oxonona-2,4-dienedioic acid; 6 —( E )-2-hydroxy-4-oxopent-2-enoic acid; 7 —succinic acid; HcdA—3-(2,4-dihydroxyphenyl)propionic acid 1-monooxygenase; HcdB—3-(2,3,5-trihydroxyphenyl)propionic acid 1,2-dioxygenase; HcdC—putative (2 E ,4 E )-2,4-dihydroxy-6-oxonona-2,4-dienedioic acid hydrolase; HcdE—7-hydroxycoumarin reductase. The dashed arrows indicate the hypothetical reactions.

    Journal: International Journal of Molecular Sciences

    Article Title: The First Step of Biodegradation of 7-Hydroxycoumarin in Pseudomonas mandelii 7HK4 Depends on an Alcohol Dehydrogenase-Type Enzyme

    doi: 10.3390/ijms22041552

    Figure Lengend Snippet: The proposed catabolic pathway of 7-hydroxycoumarin in Pseudomonas sp. 7HK4 bacteria. 1 —7-hydroxycoumarin; 2 —7-hydroxy-3,4-dihydrocoumarin; 3 —3-(2,4-dihydroxyphenyl)propionic acid; 4 —3-(2,3,5-trihydroxyphenyl)propionic acid; 5 —(2 E ,4 E )-2,4-dihydroxy-6-oxonona-2,4-dienedioic acid; 6 —( E )-2-hydroxy-4-oxopent-2-enoic acid; 7 —succinic acid; HcdA—3-(2,4-dihydroxyphenyl)propionic acid 1-monooxygenase; HcdB—3-(2,3,5-trihydroxyphenyl)propionic acid 1,2-dioxygenase; HcdC—putative (2 E ,4 E )-2,4-dihydroxy-6-oxonona-2,4-dienedioic acid hydrolase; HcdE—7-hydroxycoumarin reductase. The dashed arrows indicate the hypothetical reactions.

    Article Snippet: Our results show that the reduction of 7-hydroxycoumarin in Pseudomonas mandelii 7HK4 involves a similar approach such as in the previously characterized coumarin catabolic routes in Pseudomonas sp. 30–1 and Aspergillus niger ATCC 11394 [ , ].

    Techniques: Bacteria