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shewanella frigidimarina ncimb 400  (ATCC)


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    ATCC shewanella frigidimarina ncimb 400
    Shewanella Frigidimarina Ncimb 400, supplied by ATCC, used in various techniques. Bioz Stars score: 91/100, based on 13 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/700753/Shewanella+frigidimarina/pmc10269844__spectrum__04528___22___s0001-20-14-41
    Average 91 stars, based on 13 article reviews
    shewanella frigidimarina ncimb 400 - by Bioz Stars, 2026-10
    91/100 stars

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    other:

    Article Title: Repurposing a chemosensory macromolecular machine
    Article Snippet: 9184 yes Serratia liquefaciens ATCC 27592 yes Serratia marcescens VGH107 yes Serratia odorifera 4Rx13 yes Serratia plymuthica S13 yes Serratia proteamaculans 568 yes Serratia sp. AS13 yes Shewanella amazonensis SB2B yes Shewanella baltica OS155 yes Shewanella benthica KT99 yes Shewanella denitrificans OS217 no Shewanella frigidimarina NCIMB 400 no Shewanella halifaxensis HAW-EB4 no Shewanella loihica PV-4 yes Shewanella oneidensis MR-1 yes Shewanella pealeana ATCC 700345 no Shewanella piezotolerans WP3 no Shewanella putrefaciens CN-32 no Shewanella sediminis HAW-EB3 yes Shewanella sp. MR-4 yes Shewanella violacea DSS12 yes

    Article Title: Oxidative demethylation of algal carbohydrates by cytochrome P450 monooxygenases.
    Article Snippet: Number Name Phylum 1 Alteromonas_addita Gammaproteobacteria 2 Alteromonas_sp._ALT199 Gammaproteobacteria 3 Alteromonas_stellipolaris_LMG_21856 Gammaproteobacteria 4 Alteromonas_stellipolaris Gammaproteobacteria 5 Cellvibrio_sp._OA-2007 Gammaproteobacteria 6 Cellvibrio_sp._pealriver Gammaproteobacteria 7 Cellvibrio_sp._BR Gammaproteobacteria 8 Gilvimarinus_chinensis_DSM_19667 Gammaproteobacteria 9 Pseudoalteromonas_mariniglutinosa Gammaproteobacteria 10 Shewanella_frigidimarina Gammaproteobacteria 11 Pseudoalteromonas_haloplanktis_ATCC_14393 Gammaproteobacteria 12 Gilvimarinus_polysaccharolyticus Gammaproteobacteria 13 Gilvimarinus_agarilyticus Gammaproteobacteria 14 Marinimicrobium_agarilyticum_DSM_16975 Gammaproteobacteria 15 Pseudoalteromonas_sp._P1-13-1a Gammaproteobacteria 16 Alteromonas_sp._Mac1 Gammaproteobacteria 17 Pseudozobellia_thermophila Bacteroidetes 18 Maribacter_sp._1_2014MBL Bacteroidetes 19 Zobellia_uliginosa Bacteroidetes 20 Maribacter_dokdonensis_DSW-8 Bacteroidetes 21 Zobellia_galactanivorans Bacteroidetes 22 Maribacter_dokdonensis Bacteroidetes 23 Tenacibaculum_sp._HZ1 Bacteroidetes 24 Formosa_haliotis Bacteroidetes 25 Reichenbachiella_agariperforans Bacteroidetes 26 Maribacter_aquivivus Bacteroidetes 27 Aquimarina_latercula_DSM_2041 Bacteroidetes 28 Joostella_marina_DSM_19592 Bacteriodetes 29 Rubripirellula_obstinata Planctomycetes Supplementary Table 2: Substances used for substrate screening.

    Article Title: Synthetic Denitrifying Communities Reveal a Positive and Dynamic Biodiversity-Ecosystem Functioning Relationship during Experimental Evolution
    Article Snippet: Species abbreviations are as follows: S12, Shewanella decolorationis S12; CN-32, Shewanella putrefaciens CN-32; 400, Shewanella frigidimarina NCIMB 400; W3_18_1, Shewanella sp. W3_18_1; PV-4, Shewanella loihica PV-4; EP1, Shewanella marisflavi EP1; YQH10, Shewanella mangrovi YQH10; SB2B, Shewanella amazonensis SB2B; BAA-318, Shewanella fidelis ATCC BAA-318; OS155, Shewanella baltica OS155; HAW-EB3, Shewanella sediminis HAW-EB3; HAW-EB4, Shewanella halifaxensis HAW-EB4.

    Article Title: Synthetic Denitrifying Communities Reveal a Positive and Dynamic Biodiversity-Ecosystem Functioning Relationship during Experimental Evolution
    Article Snippet: Notes: Species abbreviations are as follows: S12, Shewanella decolorationis S12; CN-32, Shewanella putrefaciens CN-32; 400, Shewanella frigidimarina NCIMB 400; W3_18_1, Shewanella sp. W3_18_1; PV-4, Shewanella loihica PV-4; EP1, Shewanella marisflavi EP1; YQH10, Shewanella mangrovi YQH10; SB2B, Shewanella amazonensis SB2B; BAA-318, Shewanella fidelis ATCC BAA-318; OS155, Shewanella baltica OS155; HAW-EB3, Shewanella sediminis HAW-EB3; HAW-EB4, Shewanella halifaxensis HAW-EB4.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 16M strain=16M' 'Burkholderia cenocepacia strain=FL-5-3-30-S1-D7' 'Corynebacterium aurimucosum ATCC 700975' 'Providencia stuartii MRSN 2154 strain=MRSN 2154' 'Paraburkholderia rhizoxinica HKI 454 strain=HKI 454' 'Streptococcus agalactiae' 'Olsenella sp. oral taxon 807 strain=F0089' 'Cellulophaga lytica strain=HI1' 'Staphylococcus aureus subsp. aureus NCTC 8325 strain=NCTC 8325' 'Alteromonas australica strain=H 17' 'Pseudarthrobacter sulfonivorans strain=Ar51' 'Spiroplasma cantharicola strain=CC-1' 'Fervidobacterium pennivorans strain=DYC' 'Edwardsiella piscicida strain=S11-285' 'Streptomyces puniciscabiei strain=TW1S1' 'Bacillus subtilis strain=SG6' 'Mycobacterium bovis AF212297 strain=AF212297' 'Streptomyces venezuelae strain=ATCC 15439' 'Vibrio parahaemolyticus strain=CHN25' 'Bacteroides fragilis NCTC 9343' 'Streptococcus mutans strain=NG8' 'Bifidobacterium longum DJO10A strain=DJO10A' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Pseudothermotoga hypogea DSM 11164 = NBRC 106472 strain=NBRC 106472' 'Pseudomonas aeruginosa' 'Lactobacillus paraplantarum strain=L-ZS9' 'Staphylococcus lugdunensis strain=FDAARGOS 141' 'Aggregatibacter actinomycetemcomitans HK1651 strain=HK1651' 'Actinobacteria bacterium IMCC26256 strain=IMCC26256' 'Streptomyces reticuli' 'Campylobacter coli strain=OR12' 'Helicobacter pylori 35A strain=35A' 'Weissella cibaria strain=CH2' 'Escherichia coli VR50 strain=VR50' 'Ochrobactrum pseudogrignonense strain=K8' 'Propionibacterium acnes TypeIA2 P.acn17 strain=P.acn17' 'Rhizobium tropici CIAT 899 strain=CIAT 899' 'Deinococcus puniceus strain=DY1' 'Helicobacter pylori oki422 strain=oki422' 'Bradyrhizobium sp. BTAi1 strain=BTAi1' 'Clostridium tetani E88 strain=Massachusetts substr.

    Plasmid Preparation:

    Article Title: DdvK, a Novel Major Facilitator Superfamily Transporter Essential for 5,5′-Dehydrodivanillate Uptake by Sphingobium sp. Strain SYK-6
    Article Snippet: 794 Strains: ADP1, Acinetobacter sp. ADP1; ATCC13032, Corynebacterium glutamicum 795 ATCC 13032; PWD1, Rhodococcus globerulus PWD1; JMP134, Cupriavidus necator 796 on A ugust 18, 2018 by guest http://aem .asm .org/ D ow nloaded from 33 JMP134; SYK-6, Sphingobium sp. SYK-6; CSV86, Pseudomonas putida CSV86; 797 KT2440, P. putida KT2440; 19070, Rhodococcus sp. 19070; RHA1, R. jostii RHA1; 798 PRS2000, P. putida PRS2000; E6, Comamonas sp. E6; KTGAL, P. putida KTGAL; 799 M5a1, Klebsiella pneumoniae M5a1; K-12, Escherichia coli K-12 substr. .. W3110 or 800 MG1655; HW13, Bradyrhizobium sp. HW13; KP7, Nocardioides sp. KP7; 168, 801 Bacillus subtilis subsp. subtillis 168; EC16, Dickeya chrysanthemi EC16; NCIMB400, 802 Shewanella frigidimarina NCIMB 400; AB3, Agrobacterium vitis AB3; 2229, 803 Salmonella enterica subsp. enterica serovar Dublin 2229; W, E. coli W; pNMH102-2, P. 804 putida plasmid NMH102-2; ATCC17616, Burkholderia cepacia ATCC 17616; 805 ATCC13882, K. pneumoniae ATCC 13882; LT2, S. enterica serovar Typhimurium LT2; 806 Pc701, B. cepacia Pc701; RdKW20, Haemophilus influenzae Rd KW20; MBA4, 807 Burkholderia sp. MBA4; DCMB5, Dehalococcoides mccartyi DCMB5. ..

    Bacteria:

    Article Title: Comparative Proteomic Analysis of Psychrophilic vs. Mesophilic Bacterial Species Reveals Different Strategies to Achieve Temperature Adaptation
    Article Snippet: .. Bacteria included in this study were purchased from culture collections: Shewanella oneidensis (MR-1, 700550TM) and Shewanella frigidimarina (ACAM 591, 700753TM) from the Germany Microorganisms and Culture Cell collection (DMSZ) and Psychrobacter frigidicola (ACAM 304, 700361TM) from the American collection (ATCC ® ). ..

    Modification:

    Article Title: Whole-Genome Sequencing Redefines Shewanella Taxonomy
    Article Snippet: The description is as before ( ) with the following modification: the G+C content of the type-strain (ATCC BAA-318 = KMM 3582 = LMG 20552) genome is 42.8%, its approximate size is 4.80 Mbp, and its GenBank accession is GCA_000518605.1. .. The description is as before ( ) with the following modification: the G+C content of the type-strain (ACAM 591 = ATCC 700753 = CIP 105515) genome is 40.7%, its approximate size is 4.83 Mbp, and its GenBank accession is GCA_003605145.1. .. The description is as before ( ) with the following modification: the G+C content of the type-strain (HAW-EB4 = DSM 17350 = NCIMB 14093) genome is 44.6% (range for sequenced strains: 42.8–44.6%), its approximate size is 5.23 Mbp (range for sequenced strains: 5.23–5.46 Mbp), and its GenBank accession is GCA_000019185.1.



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    Main features of the species used.

    Journal: Frontiers in Microbiology

    Article Title: Comparative Proteomic Analysis of Psychrophilic vs. Mesophilic Bacterial Species Reveals Different Strategies to Achieve Temperature Adaptation

    doi: 10.3389/fmicb.2022.841359

    Figure Lengend Snippet: Main features of the species used.

    Article Snippet: Bacteria included in this study were purchased from culture collections: Shewanella oneidensis (MR-1, 700550TM) and Shewanella frigidimarina (ACAM 591, 700753TM) from the Germany Microorganisms and Culture Cell collection (DMSZ) and Psychrobacter frigidicola (ACAM 304, 700361TM) from the American collection (ATCC ® ).

    Techniques:

    Growth curves of S. oneidensis , S. frigidimarina , and P. frigidicola at 4 (blue), 12 (green), and 30°C (red/orange).

    Journal: Frontiers in Microbiology

    Article Title: Comparative Proteomic Analysis of Psychrophilic vs. Mesophilic Bacterial Species Reveals Different Strategies to Achieve Temperature Adaptation

    doi: 10.3389/fmicb.2022.841359

    Figure Lengend Snippet: Growth curves of S. oneidensis , S. frigidimarina , and P. frigidicola at 4 (blue), 12 (green), and 30°C (red/orange).

    Article Snippet: Bacteria included in this study were purchased from culture collections: Shewanella oneidensis (MR-1, 700550TM) and Shewanella frigidimarina (ACAM 591, 700753TM) from the Germany Microorganisms and Culture Cell collection (DMSZ) and Psychrobacter frigidicola (ACAM 304, 700361TM) from the American collection (ATCC ® ).

    Techniques:

    Duration of the lag phase in each bacterium at each temperature studied.

    Journal: Frontiers in Microbiology

    Article Title: Comparative Proteomic Analysis of Psychrophilic vs. Mesophilic Bacterial Species Reveals Different Strategies to Achieve Temperature Adaptation

    doi: 10.3389/fmicb.2022.841359

    Figure Lengend Snippet: Duration of the lag phase in each bacterium at each temperature studied.

    Article Snippet: Bacteria included in this study were purchased from culture collections: Shewanella oneidensis (MR-1, 700550TM) and Shewanella frigidimarina (ACAM 591, 700753TM) from the Germany Microorganisms and Culture Cell collection (DMSZ) and Psychrobacter frigidicola (ACAM 304, 700361TM) from the American collection (ATCC ® ).

    Techniques:

    Growth rates (h –1 ) of S. oneidensis , S. frigidimarina , and P. frigidicola at 4, 12, and 30°C.

    Journal: Frontiers in Microbiology

    Article Title: Comparative Proteomic Analysis of Psychrophilic vs. Mesophilic Bacterial Species Reveals Different Strategies to Achieve Temperature Adaptation

    doi: 10.3389/fmicb.2022.841359

    Figure Lengend Snippet: Growth rates (h –1 ) of S. oneidensis , S. frigidimarina , and P. frigidicola at 4, 12, and 30°C.

    Article Snippet: Bacteria included in this study were purchased from culture collections: Shewanella oneidensis (MR-1, 700550TM) and Shewanella frigidimarina (ACAM 591, 700753TM) from the Germany Microorganisms and Culture Cell collection (DMSZ) and Psychrobacter frigidicola (ACAM 304, 700361TM) from the American collection (ATCC ® ).

    Techniques:

    Immunodetection of chaperones in the cell extracts of the three bacteria at 4 and 30°C; (A) GroEL, DnaK, and GroES in Shewanella oneidensis ; (B) GroEL, DnaK, and DnaJ in Shewanella frigidimarina ; and (C) GroEL and DnaK Psychrobacter frigidicola .

    Journal: Frontiers in Microbiology

    Article Title: Comparative Proteomic Analysis of Psychrophilic vs. Mesophilic Bacterial Species Reveals Different Strategies to Achieve Temperature Adaptation

    doi: 10.3389/fmicb.2022.841359

    Figure Lengend Snippet: Immunodetection of chaperones in the cell extracts of the three bacteria at 4 and 30°C; (A) GroEL, DnaK, and GroES in Shewanella oneidensis ; (B) GroEL, DnaK, and DnaJ in Shewanella frigidimarina ; and (C) GroEL and DnaK Psychrobacter frigidicola .

    Article Snippet: Bacteria included in this study were purchased from culture collections: Shewanella oneidensis (MR-1, 700550TM) and Shewanella frigidimarina (ACAM 591, 700753TM) from the Germany Microorganisms and Culture Cell collection (DMSZ) and Psychrobacter frigidicola (ACAM 304, 700361TM) from the American collection (ATCC ® ).

    Techniques: Immunodetection, Bacteria

    Journal: Frontiers in Microbiology

    Article Title: Comparative Proteomic Analysis of Psychrophilic vs. Mesophilic Bacterial Species Reveals Different Strategies to Achieve Temperature Adaptation

    doi: 10.3389/fmicb.2022.841359

    Figure Lengend Snippet: Identified proteins in S. frigidimarina overexpressed at 4 (green) and 30°C (red).

    Article Snippet: Bacteria included in this study were purchased from culture collections: Shewanella oneidensis (MR-1, 700550TM) and Shewanella frigidimarina (ACAM 591, 700753TM) from the Germany Microorganisms and Culture Cell collection (DMSZ) and Psychrobacter frigidicola (ACAM 304, 700361TM) from the American collection (ATCC ® ).

    Techniques:

    A heat map of ratios from 2D-DIGE experiments of the proteins over-synthesized at 30 (red) and 4°C (green) found in common in at least two of the three studied bacteria. The color and intensity of each protein are calculated as a function of the logarithm based on 10 of the value of its 4/30 ratio obtained in the 2D-DIGE experiment so that values closer to –2 indicate higher ratios in proteins whose synthesis has been increased to 30°C and closer to 2 higher ratios in proteins whose synthesis has been increased to 4°C. The gray/white color indicates the absence of identification of that specific protein in the corresponding species. “ S. on ” indicates Shewanella oneidensis , “ S. fr ” indicates Shewanella frigidimarina and “ P. fr ” indicates Psychrobacter frigidicola .

    Journal: Frontiers in Microbiology

    Article Title: Comparative Proteomic Analysis of Psychrophilic vs. Mesophilic Bacterial Species Reveals Different Strategies to Achieve Temperature Adaptation

    doi: 10.3389/fmicb.2022.841359

    Figure Lengend Snippet: A heat map of ratios from 2D-DIGE experiments of the proteins over-synthesized at 30 (red) and 4°C (green) found in common in at least two of the three studied bacteria. The color and intensity of each protein are calculated as a function of the logarithm based on 10 of the value of its 4/30 ratio obtained in the 2D-DIGE experiment so that values closer to –2 indicate higher ratios in proteins whose synthesis has been increased to 30°C and closer to 2 higher ratios in proteins whose synthesis has been increased to 4°C. The gray/white color indicates the absence of identification of that specific protein in the corresponding species. “ S. on ” indicates Shewanella oneidensis , “ S. fr ” indicates Shewanella frigidimarina and “ P. fr ” indicates Psychrobacter frigidicola .

    Article Snippet: Bacteria included in this study were purchased from culture collections: Shewanella oneidensis (MR-1, 700550TM) and Shewanella frigidimarina (ACAM 591, 700753TM) from the Germany Microorganisms and Culture Cell collection (DMSZ) and Psychrobacter frigidicola (ACAM 304, 700361TM) from the American collection (ATCC ® ).

    Techniques: Synthesized, Bacteria