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Spatial Transcriptomics Inc array-based spatial transcriptomics visium 10x
Array Based Spatial Transcriptomics Visium 10x, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/visium+spatial+transcriptomics+array/10x+spatial+transcriptomics/pmc11570551-109-18-19
Average 90 stars, based on 1 article reviews
array-based spatial transcriptomics visium 10x - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Imaging:

Article Title: Integrative spatial omics reveals distinct tumor-promoting multicellular niches and immunosuppressive mechanisms in Black American and White American patients with TNBC
Article Snippet: .. For each patient core (in the BSW Discovery cohort, 3 mm diameter) analyzed using imaging mass cytometry, 10X spatial transcriptomics or Nanostring Geo Mx Digital Spatial Profiling (DSP), ROIs were selected based on two parameters- tumor location (center vs periphery) and amount of immune infiltration observed in the H&E section (immune rich vs immune poor). ..

Mass Cytometry:

Article Title: Integrative spatial omics reveals distinct tumor-promoting multicellular niches and immunosuppressive mechanisms in Black American and White American patients with TNBC
Article Snippet: .. For each patient core (in the BSW Discovery cohort, 3 mm diameter) analyzed using imaging mass cytometry, 10X spatial transcriptomics or Nanostring Geo Mx Digital Spatial Profiling (DSP), ROIs were selected based on two parameters- tumor location (center vs periphery) and amount of immune infiltration observed in the H&E section (immune rich vs immune poor). ..

Spatial Transcriptomics:

Article Title: Integrative spatial omics reveals distinct tumor-promoting multicellular niches and immunosuppressive mechanisms in Black American and White American patients with TNBC
Article Snippet: .. For each patient core (in the BSW Discovery cohort, 3 mm diameter) analyzed using imaging mass cytometry, 10X spatial transcriptomics or Nanostring Geo Mx Digital Spatial Profiling (DSP), ROIs were selected based on two parameters- tumor location (center vs periphery) and amount of immune infiltration observed in the H&E section (immune rich vs immune poor). ..

Article Title: Uncovering the Regional and Cell Specific Bioactivity of Injectable Extracellular Matrix Biomaterials in Myocardial Infarction through Spatial and Single Nucleus Transcriptomics
Article Snippet: Half of the animal hearts per each model group were used were cut into 6 slices using a stainless-steel rat heart slicer matrix (Zivic Instruments) with 1.0 mm coronal spacing. .. Odd slices were frozen in TissueTek OCT TM and sectioned into 10 μm thick slices and placed onto a 10X Visium Spatial Transcriptomics Slide or a regular histology slide. ..

Article Title: Coevolution of neoplastic and non-neoplastic reactive astrocyte states converges on mesenchymal-like and injury-response programs during murine glioblastoma progression and post-radiotherapy recurrence
Article Snippet: .. Tumor samples intended for 10x Spatial Transcriptomics were immediately snap-frozen in isopentane on dry ice, while the remaining tissues were placed in pre-chilled PBS on ice. .. Whole brain from euthanized animals embedded in Optimal Cutting Temperature Compound (OCT) (Thermo Fisher Scientific) were snap-frozen in ice-cold isopentane.

Article Title: Molecular pathology of acute spinal cord injury in middle-aged mice
Article Snippet: .. Fig. 3 Spatial transcriptomics identifies distinct domains in and around the injury site that are similar between young and middle-aged mice. ( A ) 10X Visium spatial transcriptomic spots were clustered based on gene expression and mapped on the injury site to identify eight distinct spatial domains that were named based on a combination of marker genes, Gene Ontology terms, and spatial location. ( B ) Heatmap of top differentially expressed genes for each spatial domain. ..

Article Title: Molecular pathology of acute spinal cord injury in middle-aged mice.
Article Snippet: .. Fig. 3 Spatial transcriptomics identifies distinct domains in and around the injury site that are similar between young and middle-aged mice. (A) 10X Visium spatial transcriptomic spots were clustered based on gene expression and mapped on the injury site to identify eight distinct spatial domains that were named based on a combination of marker genes, Gene Ontology terms, and spatial location. (B) Heatmap of top differentially expressed genes for each spatial domain. ..

Article Title: Spatial and single cell mapping of castleman disease reveals key stromal cell types and cytokine pathways.
Article Snippet: .. Spatial transcriptomics analysis of a validation cohort of CD We performed 10x Xenium spatial transcriptomics analysis in a validation cohort of 13 CD cases and controls. ..

other:

Article Title: A spatial transcriptomic atlas of the host response to oropharyngeal candidiasis.
Article Snippet: Spatial transcriptomics of resolving OPC identifies four major tissue compart ments in uninfected and infected tongue To analyze the microenvironment during OPC, we employed the 10× Genomics Visium spatial transcriptomics technology on frozen tissue sections (n = 4) from tongues of normal and C. albicans-infected Balb/c mice at 60 h of OPC (hereby referred to as day 2, for ease of representation).

Article Title: Visium Spatial Transcriptomics technology pipeline from 9/10 participants at biopsy 1. Using the ChimericSeq SoftwareTM, HBV-human chimeric reads that are indicative of mRNA transcribed from integrated HBV DNA were moved forward for analysis: all non-chimeric
Article Snippet: To confirm that our 3’ HBV amplicon would exclude iDNA-derived transcripts, we identified viral junctions by performing RNA sequencing on permeabilized liver tissue through the 10x Visium Spatial Transcriptomics technology pipeline from 9/10 participants at biopsy 1.

Mouse Assay:

Article Title: Molecular pathology of acute spinal cord injury in middle-aged mice
Article Snippet: .. Fig. 3 Spatial transcriptomics identifies distinct domains in and around the injury site that are similar between young and middle-aged mice. ( A ) 10X Visium spatial transcriptomic spots were clustered based on gene expression and mapped on the injury site to identify eight distinct spatial domains that were named based on a combination of marker genes, Gene Ontology terms, and spatial location. ( B ) Heatmap of top differentially expressed genes for each spatial domain. ..

Gene Expression:

Article Title: Molecular pathology of acute spinal cord injury in middle-aged mice
Article Snippet: .. Fig. 3 Spatial transcriptomics identifies distinct domains in and around the injury site that are similar between young and middle-aged mice. ( A ) 10X Visium spatial transcriptomic spots were clustered based on gene expression and mapped on the injury site to identify eight distinct spatial domains that were named based on a combination of marker genes, Gene Ontology terms, and spatial location. ( B ) Heatmap of top differentially expressed genes for each spatial domain. ..

Article Title: Molecular pathology of acute spinal cord injury in middle-aged mice.
Article Snippet: .. Fig. 3 Spatial transcriptomics identifies distinct domains in and around the injury site that are similar between young and middle-aged mice. (A) 10X Visium spatial transcriptomic spots were clustered based on gene expression and mapped on the injury site to identify eight distinct spatial domains that were named based on a combination of marker genes, Gene Ontology terms, and spatial location. (B) Heatmap of top differentially expressed genes for each spatial domain. ..

Marker:

Article Title: Molecular pathology of acute spinal cord injury in middle-aged mice
Article Snippet: .. Fig. 3 Spatial transcriptomics identifies distinct domains in and around the injury site that are similar between young and middle-aged mice. ( A ) 10X Visium spatial transcriptomic spots were clustered based on gene expression and mapped on the injury site to identify eight distinct spatial domains that were named based on a combination of marker genes, Gene Ontology terms, and spatial location. ( B ) Heatmap of top differentially expressed genes for each spatial domain. ..

Article Title: Molecular pathology of acute spinal cord injury in middle-aged mice.
Article Snippet: .. Fig. 3 Spatial transcriptomics identifies distinct domains in and around the injury site that are similar between young and middle-aged mice. (A) 10X Visium spatial transcriptomic spots were clustered based on gene expression and mapped on the injury site to identify eight distinct spatial domains that were named based on a combination of marker genes, Gene Ontology terms, and spatial location. (B) Heatmap of top differentially expressed genes for each spatial domain. ..

Biomarker Discovery:

Article Title: Spatial and single cell mapping of castleman disease reveals key stromal cell types and cytokine pathways.
Article Snippet: .. Spatial transcriptomics analysis of a validation cohort of CD We performed 10x Xenium spatial transcriptomics analysis in a validation cohort of 13 CD cases and controls. ..



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