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ncbi/genbank geo and arrayexpress databases  (Biotechnology Information)

 
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    Biotechnology Information ncbi/genbank geo and arrayexpress databases
    Ncbi/Genbank Geo And Arrayexpress Databases, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/the+arrayexpress+database/arrayexpress+database/us10675357-577-14-9
    Average 90 stars, based on 1 article reviews
    ncbi/genbank geo and arrayexpress databases - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Expressing:

    Article Title: Chemokine Ligands and Receptors Regulate Macrophage Polarization in Atherosclerosis: A Comprehensive Database Mining Study
    Article Snippet: .. In this study, data on chemokine ligands and receptors were obtained by mining public databases (the National Center of Biotechnology Information-Gene Expression Omnibus [NCBI-GEO] database, ArrayExpress database, and single-cell RNA sequencing [scRNA-seq] database), and an extensive literature search was performed. ..

    RNA Sequencing:

    Article Title: Chemokine Ligands and Receptors Regulate Macrophage Polarization in Atherosclerosis: A Comprehensive Database Mining Study
    Article Snippet: .. In this study, data on chemokine ligands and receptors were obtained by mining public databases (the National Center of Biotechnology Information-Gene Expression Omnibus [NCBI-GEO] database, ArrayExpress database, and single-cell RNA sequencing [scRNA-seq] database), and an extensive literature search was performed. ..

    Gene Expression:

    Article Title: COMMD10-Guided Phagolysosomal Maturation Promotes Clearance of Staphylococcus aureus in Macrophages
    Article Snippet: .. Gene-expression data mining Gene expression of Commd10 and Adipoq was extracted out of existing databases of sorted steady state KCs (Zigmond et al., 2014) and LCMs (Sierro et al., 2017), deposited at the National Center for Biotechnology Information Gene Expression Omnibus public database2 (GSE55606) and ArrayExpress database (E-MTAB-5932), respectively. ..

    Article Title: CSPG4 expression in soft tissue sarcomas is associated with poor prognosis and low cytotoxic immune response
    Article Snippet: .. We collected clinicopathological and gene expression data of clinical STS samples from 15 public data sets through the National Center for Biotechnology Information (NCBI)/Genbank GEO, ArrayExpress databases, and authors' websites (Additional file : Table S1). ..

    Article Title: CCAR2/DBC1 and Hsp60 Positively Regulate Expression of Survivin in Neuroblastoma Cells
    Article Snippet: .. Microarray data are available in the ArrayExpress database ( www.ebi.ac.uk/arrayexpress ) (access on 14 June 2017) (Accession No. E-MTAB-2706) and the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database (Accession No. GSE45547 [ ] and GSE62564 [ ]). ..

    other:

    Article Title: PARP1 expression in soft tissue sarcomas is a poor‐prognosis factor and a new potential therapeutic target
    Article Snippet: All data are available in the National Center for Biotechnology Information (NCBI)/GenBank GEO and ArrayExpress databases and authors’ web sites as indicated in S1.

    Article Title: Epithelial-to-mesenchymal transition lowers the cholesterol pathway, which influences colon tumors differentiation
    Article Snippet: These latter had been collected from the National Center for Biotechnology Information (NCBI)/Genbank GEO, ArrayExpress and TCGA databases

    Microarray:

    Article Title: CCAR2/DBC1 and Hsp60 Positively Regulate Expression of Survivin in Neuroblastoma Cells
    Article Snippet: .. Microarray data are available in the ArrayExpress database ( www.ebi.ac.uk/arrayexpress ) (access on 14 June 2017) (Accession No. E-MTAB-2706) and the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database (Accession No. GSE45547 [ ] and GSE62564 [ ]). ..



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    Image Search Results


    Chemokines expression level in tissue-specific macrophages (log 2 TPM) RNA-Seq datasets were collected from ArrayXpress of European Bioinformatics Institute, which stores data from high-throughput functional genomics experiments ( https://www.ebi.ac.uk/arrayexpress ). These data include information on the expression of T-cell costimulation receptors and coinhibition receptors through experiments submitted directly to ArrayXpress (PMID: 25480296). The red colour indicated log 2 TPM > 0, green colour background indicated log 2 TPM < 0.

    Journal: CJC Open

    Article Title: Chemokine Ligands and Receptors Regulate Macrophage Polarization in Atherosclerosis: A Comprehensive Database Mining Study

    doi: 10.1016/j.cjco.2024.11.018

    Figure Lengend Snippet: Chemokines expression level in tissue-specific macrophages (log 2 TPM) RNA-Seq datasets were collected from ArrayXpress of European Bioinformatics Institute, which stores data from high-throughput functional genomics experiments ( https://www.ebi.ac.uk/arrayexpress ). These data include information on the expression of T-cell costimulation receptors and coinhibition receptors through experiments submitted directly to ArrayXpress (PMID: 25480296). The red colour indicated log 2 TPM > 0, green colour background indicated log 2 TPM < 0.

    Article Snippet: In this study, data on chemokine ligands and receptors were obtained by mining public databases (the National Center of Biotechnology Information-Gene Expression Omnibus [NCBI-GEO] database, ArrayExpress database, and single-cell RNA sequencing [scRNA-seq] database), and an extensive literature search was performed.

    Techniques: Expressing, RNA Sequencing, High Throughput Screening Assay, Functional Assay