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Bioarray Inc software environment (base) database
Software Environment (Base) Database, supplied by Bioarray Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+environment+(base)+database/software+environment++base+/pmc05609187-85-13-11
Average 90 stars, based on 1 article reviews
software environment (base) database - by Bioz Stars, 2026-09
90/100 stars

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Article Title: Implementation of an Open Source Software solution for Laboratory Information Management and automated RNAseq data analysis in a large-scale Cancer Genomics initiative using BASE with extension package Reggie
Article Snippet: Using the free open-source BioArray Software Environment (BASE) and extension package Reggie we have implemented a laboratory information management system and an automated RNAseq data analysis pipeline that successfully manage a large regional cancer genomics initiative.

Article Title: Potential Transcriptional Biomarkers to Guide Glucocorticoid Replacement in Autoimmune Addison’s Disease
Article Snippet: Data was loaded onto BioArray Software Enviroment (BASE), and PANTHER was used to annotate the probe IDs.

Article Title: Assessment of early response biomarkers in relation to long‐term survival in patients with HER2‐negative breast cancer receiving neoadjuvant chemotherapy plus bevacizumab: Results from the Phase II PROMIX trial
Article Snippet: The data were normalized using BioArray Software Environment (BASE) and R. Data were background corrected and quantile normalized and probes with p ‐values >0.01, >30% missing values and/or a variance <0.15 were filtered out.

Article Title: Potential Biomarkers for Radiation-Induced Renal Toxicity following 177 Lu-Octreotate Administration in Mice
Article Snippet: The web-based BioArray Software Environment (BASE) was used for data preprocessing and quantile normalization.

Article Title: Identification of characteristic molecular signature of Müllerian inhibiting substance in human HPV-related cervical cancer cells
Article Snippet: The resulting data collected from each array were submitted to the BioArray Software Environment (BASE) database at the micro-array core facility in the Department of Pathology, College of Medicine at The Catholic University of Korea, Seoul, Republic of Korea ( http://genomics.catholic.ac.kr/ ).

Article Title: Dose-specific transcriptional responses in thyroid tissue in mice after (131)I administration.
Article Snippet: BioArray Software Environment system (BASE) were used to preprocess data and for quantile normalization of the raw signal intensities [18].

Article Title: PI3K–mTORC2 but not PI3K–mTORC1 Regulates Transcription of HIF2A/EPAS1 and Vascularization in Neuroblastoma
Article Snippet: Mean spot intensities were background corrected and quantile normalized using BioArray Software Environment (BASE) (22).

Article Title: Priming increases the anti-tumor effect and therapeutic window of 177Lu-octreotate in nude mice bearing human small intestine neuroendocrine tumor GOT1
Article Snippet: Data pre-processing and quantile normalization were performed on the raw signal intensities using the BioArray Software Environment (BASE) system.



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