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simplot/bootscan analysis  (Simplot Science)

 
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    Simplot Science simplot/bootscan analysis
    Simplot/Bootscan Analysis, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/simplot+bootscan+analysis/simplot+bootscan+analysis/pmc11448424__reviewer___comments-20-15-19
    Average 90 stars, based on 1 article reviews
    simplot/bootscan analysis - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    other:

    Article Title: A Novel Genotype of Orientia tsutsugamushi in Human Cases of Scrub Typhus from Southeastern India.
    Article Snippet: TA716, and Kato reference sequences shows an overlapping curve in variable domain-I against the new genotype (Ot-TJTN); (b) SimPlot bootscan graphs with reference sequences.

    Article Title: Genetic characteristics of human parainfluenza viruses 1–4 associated with acute lower respiratory tract infection in Chinese children, during 2015–2021
    Article Snippet: The author reported that only the HPIV 1 strain showed a recombination event in the F gene, confirmed by Simplot/bootscan analysis in figure3.

    Article Title: Clinical, Laboratory, and Molecular Epidemiology of an Outbreak of Aseptic Meningitis Due to a Triple-Recombinant Echovirus in Ashburton, New Zealand
    Article Snippet: The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/v14040658/s1 , Table S1: Laboratory findings on patients tested, Figure S1: Whole genome Simplot BootScan analysis including Enterovirus prototype strains; Figure S2: Maximum-likelihood phylogenetic analysis based on P1, P2 and P3 coding sequences.

    Article Title: Characteristics of HIV-1 molecular transmission networks and drug resistance among men who have sex with men in Tianjin, China (2014–2018)
    Article Snippet: Recombination assessment employed two methods: a Simplot Bootscan (two-parameter Kimura model, window size 200 bp, 2-bp step) and Recombination Identification Program 3.0 (RIP 3.0, https://www.hiv.lanl.gov/content/sequence/RIP/RIP.html ) [ , ].

    Article Title: Genetic characteristics of human parainfluenza viruses 1–4 associated with acute lower respiratory tract infection in Chinese children, during 2015–2021
    Article Snippet: The author reported that only the HPIV 1 strain showed a recombination event in the F gene, confirmed by Simplot/bootscan analysis in figure 3.

    Sequencing:

    Article Title: Genetic characterizations and molecular epidemiology of human echovirus 30 isolated from Ningxia, China
    Article Snippet: .. The whole genome Simplot BootScan analysis was conducted with the query sequence of NX2017E30 strain. ..



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    Similarity plot analysis comparing strain Ningxia echovirus 30 (E30) with enterovirus B (EV-B) strains, based on the full-length genomes. The 2017 E30 strains were used independently as query sequences. The nucleotide sequence of each strain was compared with those of strains of EV-B, using Simplot software version 3.5.1, with a sliding window of 200 nucleotides moving in steps of 20. Colored lines indicate the strains described in this article, and other strains are indicated by gray lines. The whole genome Simplot BootScan analysis was conducted with the query sequence of NX2017E30 strain. A) The enterovirus genomic organization is shown at the top. B) Similarity plot analysis. C) Bootscanning analysis on the putative recombinant strain and its parental sequences.

    Journal: Biosafety and Health

    Article Title: Genetic characterizations and molecular epidemiology of human echovirus 30 isolated from Ningxia, China

    doi: 10.1016/j.bsheal.2023.10.001

    Figure Lengend Snippet: Similarity plot analysis comparing strain Ningxia echovirus 30 (E30) with enterovirus B (EV-B) strains, based on the full-length genomes. The 2017 E30 strains were used independently as query sequences. The nucleotide sequence of each strain was compared with those of strains of EV-B, using Simplot software version 3.5.1, with a sliding window of 200 nucleotides moving in steps of 20. Colored lines indicate the strains described in this article, and other strains are indicated by gray lines. The whole genome Simplot BootScan analysis was conducted with the query sequence of NX2017E30 strain. A) The enterovirus genomic organization is shown at the top. B) Similarity plot analysis. C) Bootscanning analysis on the putative recombinant strain and its parental sequences.

    Article Snippet: The whole genome Simplot BootScan analysis was conducted with the query sequence of NX2017E30 strain.

    Techniques: Sequencing, Software, Recombinant