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bootscan analysis of simplot software  (Simplot Science)

 
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    Simplot Science bootscan analysis of simplot software
    Bootscan Analysis Of Simplot Software, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/simplot+bootscan+analysis/bootscan+analysis+simplot+version+3+5+1/pm39288718-143-21-24
    Average 90 stars, based on 1 article reviews
    bootscan analysis of simplot software - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Isolation:

    Article Title: Uncovering the Prevalence and Genetic Characterization of Rabbit-Derived Paslahepevirus Balayani (Hepatitis E Virus) in Hebei Province, China.
    Article Snippet: Paslahepevirus balayani (hepatitis E virus) is a zoonotic pathogen, with rabbit Paslahepevirus balayani (HEV-3ra) being widely distributed among global rabbit populations.. Notably, in China, rabbits constitute a significant HEV host, second only to swine.. Emerging evidence suggests that HEV-3ra possesses the capability to cross species barriers and infect humans.

    Immunofluorescence:

    Article Title: Discovery of a novel Betacoronavirus 1, cpCoV, in goats in China: The new risk of cross-species transmission.
    Article Snippet: .. Bootscan analysis was performed with Simplot, version 3.5.1. https://doi.org/10.1371/journal.ppat.1012974.g003 PLOS Pathogens | https://doi.org/10.1371/journal.ppat.1012974 March 18, 2025 14 / 23 three blind passages, the challenge group samples induced a CPE, and the cell cultures were identified as cpCoV-positive by RT-qPCR, RT-PCR, and IFA methods. ..

    Software:

    Article Title: Identification of a novel HIV-1 third-generation circulating recombinant form (CRF126_0755) in Guangdong, China.
    Article Snippet: .. Branches with bootstrap values greater than 70% were considered reliable, and the values are shown at the nodes. (B) BootScan analysis, performed using SimPlot 3.5 software with a window size of 300 bp and step size of 20 bp. (C) Genome mosaic map of CRF126_0755 NFLG, generated using the LANL Recombinant HIV-1 Drawing Tool (https:// www. hiv. lanl. gov/ conte nt/ seque nce/ DRAW_ CRF/ recom_ mapper. html) in almost all CRF55_01B strains, was found in all four CRF126-0755 NFLGs, possibly conferring increased drug resistance [17]. ..

    Generated:

    Article Title: Identification of a novel HIV-1 third-generation circulating recombinant form (CRF126_0755) in Guangdong, China.
    Article Snippet: .. Branches with bootstrap values greater than 70% were considered reliable, and the values are shown at the nodes. (B) BootScan analysis, performed using SimPlot 3.5 software with a window size of 300 bp and step size of 20 bp. (C) Genome mosaic map of CRF126_0755 NFLG, generated using the LANL Recombinant HIV-1 Drawing Tool (https:// www. hiv. lanl. gov/ conte nt/ seque nce/ DRAW_ CRF/ recom_ mapper. html) in almost all CRF55_01B strains, was found in all four CRF126-0755 NFLGs, possibly conferring increased drug resistance [17]. ..

    Article Title: Mixed Infections Unravel Novel HCV Inter-Genotypic Recombinant Forms within the Conserved IRES Region.
    Article Snippet: .. Moreover, the Bootscan graphs generated by Simplot software (version 3.5.1) indicated similar results (Figure 3, right panels). ..

    Recombinant:

    Article Title: Identification of a novel HIV-1 third-generation circulating recombinant form (CRF126_0755) in Guangdong, China.
    Article Snippet: .. Branches with bootstrap values greater than 70% were considered reliable, and the values are shown at the nodes. (B) BootScan analysis, performed using SimPlot 3.5 software with a window size of 300 bp and step size of 20 bp. (C) Genome mosaic map of CRF126_0755 NFLG, generated using the LANL Recombinant HIV-1 Drawing Tool (https:// www. hiv. lanl. gov/ conte nt/ seque nce/ DRAW_ CRF/ recom_ mapper. html) in almost all CRF55_01B strains, was found in all four CRF126-0755 NFLGs, possibly conferring increased drug resistance [17]. ..

    other:

    Article Title: Whole-Genome Analysis of Porcine Epidemic Diarrhea Virus from Yunnan, China.
    Article Snippet: The above methods were further validated and confirmed for the presence of genome recombination and break sites using BootScan in Simplot software, with the BootScan window size set to 400 bp, the gap size set to 40 bp, and other parameters set to default values.

    Article Title: Genetic characterization of a novel HIV-1 circulating recombinant form (CRF162_cpx) involving CRF01_AE, CRF07_BC and subtype B in Guangdong, China.
    Article Snippet: Human immunodeficiency virus type 1 (HIV-1) is characterized by its extremely high level of genetic diversity.. The spread of different subtypes in the same population often leads to the emergence of circulating recombinant forms (CRFs) and unique recombinant forms (URFs).. At present, the main recombinant subtypes of HIV-1 in China originate from CRF07_BC, CRF01_AE, CRF55_01B and subtype B.

    Article Title: Identification of a novel HIV-1 third-generation circulating recombinant form (CRF126_0755) in Guangdong, China.
    Article Snippet: The sequences were analyzed using jpHMM (http:// jpHMM. gobics. de/ submi ssion_ hiv. html), RIP (https:// www. hiv. lanl. gov/ conte nt/ seque nce/ RIP/ RIP. html), and BootScan (Simplot software V3.5.1) with a window size of 350 bp and steps of 20 bp.



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    Image Search Results


    Similarity plot analysis comparing strain Ningxia echovirus 30 (E30) with enterovirus B (EV-B) strains, based on the full-length genomes. The 2017 E30 strains were used independently as query sequences. The nucleotide sequence of each strain was compared with those of strains of EV-B, using Simplot software version 3.5.1, with a sliding window of 200 nucleotides moving in steps of 20. Colored lines indicate the strains described in this article, and other strains are indicated by gray lines. The whole genome Simplot BootScan analysis was conducted with the query sequence of NX2017E30 strain. A) The enterovirus genomic organization is shown at the top. B) Similarity plot analysis. C) Bootscanning analysis on the putative recombinant strain and its parental sequences.

    Journal: Biosafety and Health

    Article Title: Genetic characterizations and molecular epidemiology of human echovirus 30 isolated from Ningxia, China

    doi: 10.1016/j.bsheal.2023.10.001

    Figure Lengend Snippet: Similarity plot analysis comparing strain Ningxia echovirus 30 (E30) with enterovirus B (EV-B) strains, based on the full-length genomes. The 2017 E30 strains were used independently as query sequences. The nucleotide sequence of each strain was compared with those of strains of EV-B, using Simplot software version 3.5.1, with a sliding window of 200 nucleotides moving in steps of 20. Colored lines indicate the strains described in this article, and other strains are indicated by gray lines. The whole genome Simplot BootScan analysis was conducted with the query sequence of NX2017E30 strain. A) The enterovirus genomic organization is shown at the top. B) Similarity plot analysis. C) Bootscanning analysis on the putative recombinant strain and its parental sequences.

    Article Snippet: The whole genome Simplot BootScan analysis was conducted with the query sequence of NX2017E30 strain.

    Techniques: Sequencing, Software, Recombinant