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bootscan analysis  (Simplot Science)

 
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    Simplot Science bootscan analysis
    Genomic recombination analysis of HCoV-OC43 and HCoV-HKU1. ( A ) <t>Bootscan</t> analysis of HCoV-OC43 genomes comparing recombination patterns between genotype K, lineage 1, and lineage 2. Reference genomes from genotypes A–J were used as putative parental strains. ( B ) Bootscan analysis of HCoV-HKU1 complete genome was performed using reference genomes for genotypes A, B and C as putative parental genotype. Co-infection status (CO: co-infected; N: non-coinfected).
    Bootscan Analysis, supplied by Simplot Science, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/simplot+bootscan+analysis/analysis+bootscan/pmc12474069-27-4-6
    Average 86 stars, based on 1 article reviews
    bootscan analysis - by Bioz Stars, 2026-10
    86/100 stars

    Images

    1) Product Images from "Neutral Impact of SARS-CoV-2 Coinfection on the Recombination-Driven Evolution of Endemic HCoV-OC43"

    Article Title: Neutral Impact of SARS-CoV-2 Coinfection on the Recombination-Driven Evolution of Endemic HCoV-OC43

    Journal: Viruses

    doi: 10.3390/v17091263

    Genomic recombination analysis of HCoV-OC43 and HCoV-HKU1. ( A ) Bootscan analysis of HCoV-OC43 genomes comparing recombination patterns between genotype K, lineage 1, and lineage 2. Reference genomes from genotypes A–J were used as putative parental strains. ( B ) Bootscan analysis of HCoV-HKU1 complete genome was performed using reference genomes for genotypes A, B and C as putative parental genotype. Co-infection status (CO: co-infected; N: non-coinfected).
    Figure Legend Snippet: Genomic recombination analysis of HCoV-OC43 and HCoV-HKU1. ( A ) Bootscan analysis of HCoV-OC43 genomes comparing recombination patterns between genotype K, lineage 1, and lineage 2. Reference genomes from genotypes A–J were used as putative parental strains. ( B ) Bootscan analysis of HCoV-HKU1 complete genome was performed using reference genomes for genotypes A, B and C as putative parental genotype. Co-infection status (CO: co-infected; N: non-coinfected).

    Techniques Used: Infection

    Related Articles

    Recombinant:

    Article Title: Epidemiological dynamics and molecular characteristics of HIV-1 among transgender women in the Central-West region of Brazil
    Article Snippet: .. Potential recombinant sequences were identified using a bootscan analysis in the SimPlot version 3.5.1 program (sliding window of 200 bp, step size of 10 bp). ..

    Article Title: Epidemiological dynamics and molecular characteristics of HIV-1 among transgender women in the Central-West region of Brazil.
    Article Snippet: .. Potential recombinant sequences were identified using a bootscan analysis in the SimPlot version 3.5.1 program (sliding window of 200 bp, step size of 10 bp). ..

    other:

    Article Title: Phylogenetic Characteristics and High Prevalence of a Merbecovirus in Hedgehogs from Greenspace of a Metropolis, China
    Article Snippet: To assess potential recombination events in the genomes of hedgehog CoVs identified in this study, Bootscan analysis was performed using SimPlot (v3.5.1; SCRoftware, Johns Hopkins University School of Medicine, Baltimore, MD, USA) with a 1000 bp sliding window and 200 bp step size, based on the Kimura two-parameter model and the Neighbor-Joining method.

    Sequencing:

    Article Title: Adaptive Evolution and Distinct Mutation Signatures of Full‐Length HBV Quasispecies in HBeAg‐Negative Chronic Hepatitis B
    Article Snippet: .. Using RDP4 results, the major and minor parental quasispecies sequences, together with one reference genotype C and one genotype H sequence from NCBI, were selected for BootScan analysis using SimPlot to validate intrahost recombination. ..



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    Image Search Results


    Similarity plot analysis comparing strain Ningxia echovirus 30 (E30) with enterovirus B (EV-B) strains, based on the full-length genomes. The 2017 E30 strains were used independently as query sequences. The nucleotide sequence of each strain was compared with those of strains of EV-B, using Simplot software version 3.5.1, with a sliding window of 200 nucleotides moving in steps of 20. Colored lines indicate the strains described in this article, and other strains are indicated by gray lines. The whole genome Simplot BootScan analysis was conducted with the query sequence of NX2017E30 strain. A) The enterovirus genomic organization is shown at the top. B) Similarity plot analysis. C) Bootscanning analysis on the putative recombinant strain and its parental sequences.

    Journal: Biosafety and Health

    Article Title: Genetic characterizations and molecular epidemiology of human echovirus 30 isolated from Ningxia, China

    doi: 10.1016/j.bsheal.2023.10.001

    Figure Lengend Snippet: Similarity plot analysis comparing strain Ningxia echovirus 30 (E30) with enterovirus B (EV-B) strains, based on the full-length genomes. The 2017 E30 strains were used independently as query sequences. The nucleotide sequence of each strain was compared with those of strains of EV-B, using Simplot software version 3.5.1, with a sliding window of 200 nucleotides moving in steps of 20. Colored lines indicate the strains described in this article, and other strains are indicated by gray lines. The whole genome Simplot BootScan analysis was conducted with the query sequence of NX2017E30 strain. A) The enterovirus genomic organization is shown at the top. B) Similarity plot analysis. C) Bootscanning analysis on the putative recombinant strain and its parental sequences.

    Article Snippet: The whole genome Simplot BootScan analysis was conducted with the query sequence of NX2017E30 strain.

    Techniques: Sequencing, Software, Recombinant