Review



velvet algorithm integrated into the ridom seqsphere + software version 7  (Ridom GmbH)

 
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
    • 90
      Buy from Supplier

    Structured Review

    Ridom GmbH velvet algorithm integrated into the ridom seqsphere + software version 7
    Velvet Algorithm Integrated Into The Ridom Seqsphere + Software Version 7, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/velvet+algorithm+integrated+into+the+ridom+seqsphere+++software+version+7/pmc12164281-59-10-15
    Average 90 stars, based on 1 article reviews
    velvet algorithm integrated into the ridom seqsphere + software version 7 - by Bioz Stars, 2026-09
    90/100 stars

    Images

    Related Articles

    Software:

    Article Title:
    Article Snippet: Genomic DNA was paired-end sequenced with a MiSeq Reagent kit v2 2×150 bp (Illumina San Diego, United States (US)) with an average insertion size of 300 bp. .. The resulting reads were quality-trimmed and de novo–assembled using the Velvet algorithm integrated into the Ridom Seqsphere + software version 7 (Ridom GmbH, Muenster, Germany). ..



    Similar Products

    seqsphere+ software  (Ridom GmbH)
    90
    Ridom GmbH seqsphere+ software
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Seqsphere+ Software, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/seqsphere/pmc12278488-119-12-15
    Average 90 stars, based on 1 article reviews
    seqsphere+ software - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    software ridom seqsphere  (Ridom GmbH)
    90
    Ridom GmbH software ridom seqsphere
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Software Ridom Seqsphere, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/ridom+seqsphere/pm40662699-81-13-15
    Average 90 stars, based on 1 article reviews
    software ridom seqsphere - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    seqsphere + software v 7.7.2  (Ridom GmbH)
    90
    Ridom GmbH seqsphere + software v 7.7.2
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Seqsphere + Software V 7.7.2, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/seqsphere/pm40598567-87-7-12
    Average 90 stars, based on 1 article reviews
    seqsphere + software v 7.7.2 - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    target definer tool in ridom seqsphere+ software  (Ridom GmbH)
    90
    Ridom GmbH target definer tool in ridom seqsphere+ software
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Target Definer Tool In Ridom Seqsphere+ Software, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/seqsphere++target+definer+tool/pm40633272-114-13-13
    Average 90 stars, based on 1 article reviews
    target definer tool in ridom seqsphere+ software - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    target definer tool within ridom seqsphere+ software version 8  (Ridom GmbH)
    90
    Ridom GmbH target definer tool within ridom seqsphere+ software version 8
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Target Definer Tool Within Ridom Seqsphere+ Software Version 8, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/target+definer+tool+within+ridom+seqsphere++software+version+8/pm40570713-94-23-27
    Average 90 stars, based on 1 article reviews
    target definer tool within ridom seqsphere+ software version 8 - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    cgmlst-based minimum spanning tree (mst) constructed using ridom seqsphere+ software version 8  (Ridom GmbH)
    90
    Ridom GmbH cgmlst-based minimum spanning tree (mst) constructed using ridom seqsphere+ software version 8
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Cgmlst Based Minimum Spanning Tree (Mst) Constructed Using Ridom Seqsphere+ Software Version 8, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/cgmlst+scheme+ridom+seqsphere/pm40570713-98-9-17
    Average 90 stars, based on 1 article reviews
    cgmlst-based minimum spanning tree (mst) constructed using ridom seqsphere+ software version 8 - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    seqsphere+ software version 10.0.5  (Ridom GmbH)
    90
    Ridom GmbH seqsphere+ software version 10.0.5
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Seqsphere+ Software Version 10.0.5, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/seqsphere/pm40532976-111-0-7
    Average 90 stars, based on 1 article reviews
    seqsphere+ software version 10.0.5 - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    seqsphere + software  (Ridom GmbH)
    90
    Ridom GmbH seqsphere + software
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Seqsphere + Software, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/seqsphere/10__2807_slash_1560___7917__es__2025__30__23__2400590-79-13-13
    Average 90 stars, based on 1 article reviews
    seqsphere + software - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    velvet algorithm integrated into the ridom seqsphere + software version 7  (Ridom GmbH)
    90
    Ridom GmbH velvet algorithm integrated into the ridom seqsphere + software version 7
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Velvet Algorithm Integrated Into The Ridom Seqsphere + Software Version 7, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/velvet+algorithm+integrated+into+the+ridom+seqsphere+++software+version+7/pmc12164281-59-10-15
    Average 90 stars, based on 1 article reviews
    velvet algorithm integrated into the ridom seqsphere + software version 7 - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom Seqsphere + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site

    Journal: BMC Microbiology

    Article Title: Multi-host distribution of Rhodococcus equi (Prescottella equi) strains and their phylogenomic clustering

    doi: 10.1186/s12866-025-04152-8

    Figure Lengend Snippet: Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom Seqsphere + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site

    Article Snippet: Core-genome MLST (cgMLST) analysis for 286 R. equi genomes was performed in Ridom Seqsphere+ (v9.0.1; Ridom GmbH, Münster, Germany).

    Techniques: Construct, Generated, Isolation, Plasmid Preparation