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reference sequence (refseq) and annotations  (Santa Cruz Biotechnology)


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    Santa Cruz Biotechnology reference sequence (refseq) and annotations
    Reference Sequence (Refseq) And Annotations, supplied by Santa Cruz Biotechnology, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/reference+sequence+(refseq)+and+annotations/refseq/pmc11652270-59-0-11
    Average 90 stars, based on 1 article reviews
    reference sequence (refseq) and annotations - by Bioz Stars, 2026-09
    90/100 stars

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    other:

    Article Title: A Reliable Targeted Next-Generation Sequencing Strategy for Diagnosis of Myopathies and Muscular Dystrophies, Especially for the Giant Titin and Nebulin Genes.
    Article Snippet: The RefSeq coding sequences NM_accession numbers from University of California, Santa Cruz (http://hgdownload.cse.ucsc. edu), reported in the Leiden Open Variation Database (http://www.lovd.nl/3.0/home), were used and determined as consensual for genetic diagnosis within a French nationwide working group (Krahn et al submitted).

    Article Title: Variant discovery in patients with Mendelian vascular anomalies by next-generation sequencing and their use in patient clinical management.
    Article Snippet: Chromosome Start End Geneb chr9 130577945 130578100 ENG chr9 130578180 130578347 ENG chr9 130579412 130579497 ENG chr9 130580383 130580671 ENG chr9 130580979 130581126 ENG chr9 130581885 130581954 ENG chr9 130582163 130582331 ENG chr9 130586567 130586740 ENG chr9 130587063 130587268 ENG chr9 130587494 130587651 ENG chr9 130587958 130588154 ENG chr9 130588773 130588966 ENG chr9 130591950 130592121 ENG chr9 130605357 130605539 ENG chr9 130616552 130616649 ENG chr18 48573401 48573680 SMAD4 chr18 48575040 48575245 SMAD4 chr18 48575649 48575709 SMAD4 chr18 48581135 48581378 SMAD4 chr18 48584479 48584629 SMAD4 chr18 48584694 48584841 SMAD4 chr18 48586220 48586301 SMAD4 chr18 48591777 48591991 SMAD4 chr18 48593373 48593572 SMAD4 chr18 48602992 48603161 SMAD4 chr18 48604610 48604852 SMAD4 chr, Chromosome. aRefSeq University of California, Santa Cruz (UCSC), hg19. bExpansions for the genes listed are available at U.S. National Library of Medicine, Genetics Home Reference (https://ghr.nlm.nih.gov/gene).

    Article Title: Genetic removal of p70 S6K1 corrects coding sequence length-dependent alterations in mRNA translation in fragile X syndrome mice.
    Article Snippet: Annotations for all M. musculus protein-coding genes in RefSeq were obtained from University of California, Santa Cruz table browser.

    Article Title: DeOri 10.0: An Updated Database of Experimentally Identified Eukaryotic Replication Origins
    Article Snippet: Reference sequence (RefSeq) and annotations were downloaded from University of California Santa Cruz (UCSC) [ ], National Center for Biotechnology Information (NCBI) [ ], WormBase [ ], Database of Drosophila Genes & Genomes (Flybase) [ ], and The Arabidopsis Information Resource (TAIR) [ ].

    Article Title: Noninvasive prediction of axillary lymph node status in breast cancer using promoter profiling of circulating cell-free DNA
    Article Snippet: In briefly, gene information was downloaded from RefSeq of University of California Santa Cruz [ ].

    Sequencing:

    Article Title: Resveratrol decreases the expression of genes involved in inflammation through transcriptional regulation.
    Article Snippet: cDNA libraries (5 μg each) were sequenced using the 454 GS FLX Titanium platform (Roche 454 Life Sciences, Branford, CT, USA) according to the manufacturer’s instructions. .. The sequencing data were aligned against the RefSeq database of human expressed sequences, provided by the University of California Santa Cruz (website: hgdowload.soe.ucsc.edu/goldenPath/hg19/bigZips/ref Mrna.fa.gz, accessed in January 30, 2014). ..

    Article Title: DeOri 10.0: An Updated Database of Experimentally Identified Eukaryotic Replication Origins.
    Article Snippet: .. Reference sequence (RefSeq) and annotations were downloaded from University 108 of California Santa Cruz (UCSC) [27], National Center for Biotechnology Information 109 (NCBI) [28], WormBase [29], Database of Drosophila Genes & Genomes (Flybase) 110 [30], and The Arabidopsis Information Resource (TAIR) [31]. ..

    Comparison:

    Article Title: Whole-Genome Sequencing as a First-Line Genetic Test in Familial Dilated Cardiomyopathy
    Article Snippet: .. In comparison, PS targets included exons and conserved flanking sequences of isoforms from University of California Santa Cruz (UCSC) knownGene and RefSeq, while WES SureSelect targets were based on subsets of isoforms from UCSC, RefSeq, GENCODE, and CCDS databases. ..



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