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Bioedit Company multiple sequence alignments
Multiple Sequence Alignments, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/multiple+sequence+alignments/alignments+multiple+sequence/pmc12855810-48-0-6
Average 86 stars, based on 1 article reviews
multiple sequence alignments - by Bioz Stars, 2026-09
86/100 stars

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Article Title: Functional assessment and comparison of different methods of genomic DNA extraction from fresh ejaculated and cryopreserved caprine sperms for enhanced quality and long-term DNA banking
Article Snippet: Acquiring high-quality DNA from spermatozoa is crucial for reliable downstream biotechnological applications, but obtaining intact genomic DNA (gDNA) from sperm can be challenging due to issues with cell lysis and DNA fragmentation.. In this study, we evaluated six gDNA extraction methods from fresh ejaculated and cryopreserved caprine sperm, aiming to improve organic thiol (β-Mercaptoethanol; β-ME)or commercial kit-based methods for high-quality gDNA recovery suitable for molecular analyses after long-term storage.. We standardized a modified β-ME-based extraction method and compared its performance with in-house or commercial gDNA extraction kits using Dithiothreitol (DTT) or a β-ME-DTT combination.

Article Title: Low Prevalence of Zika Virus RNA Among Thai Blood Donors.
Article Snippet: Background: Zika virus (ZIKV) is primarily transmitted by Aedesmosquitoes, which thrive in tropical regions.. However, reports indicate that asymptomatic carriers can inadvertently transmit ZIKV through blood and blood components.. Methods: To evaluate the risk of ZIKV transmission via blood donation, we investigated the prevalence of ZIKV RNA among healthy Thai blood donors over two consecutive rainy seasons.

Software:

Article Title: Functional assessment and comparison of different methods of genomic DNA extraction from fresh ejaculated and cryopreserved caprine sperms for enhanced quality and long-term DNA banking
Article Snippet: Acquiring high-quality DNA from spermatozoa is crucial for reliable downstream biotechnological applications, but obtaining intact genomic DNA (gDNA) from sperm can be challenging due to issues with cell lysis and DNA fragmentation.. In this study, we evaluated six gDNA extraction methods from fresh ejaculated and cryopreserved caprine sperm, aiming to improve organic thiol (β-Mercaptoethanol; β-ME)or commercial kit-based methods for high-quality gDNA recovery suitable for molecular analyses after long-term storage.. We standardized a modified β-ME-based extraction method and compared its performance with in-house or commercial gDNA extraction kits using Dithiothreitol (DTT) or a β-ME-DTT combination.

Sequencing:

Article Title: Low Prevalence of Zika Virus RNA Among Thai Blood Donors.
Article Snippet: Background: Zika virus (ZIKV) is primarily transmitted by Aedesmosquitoes, which thrive in tropical regions.. However, reports indicate that asymptomatic carriers can inadvertently transmit ZIKV through blood and blood components.. Methods: To evaluate the risk of ZIKV transmission via blood donation, we investigated the prevalence of ZIKV RNA among healthy Thai blood donors over two consecutive rainy seasons.

Article Title: Functional Analysis of the Cyclin E Gene in the Reproductive Development of Rainbow Trout ( Oncorhynchus mykiss ).
Article Snippet: .. Tertiary structures were predicted with AlphaFold2, while sequence alignments were con- ducted in BioEdit (v7.2.5). ..

Article Title: Midnolin has an ancient origin and negatively regulates type I IFN response in teleost fish.
Article Snippet: Midnolin has recently been shown to mediate ubiquitin-independent proteasomal degradation of nuclear substrates, yet its evolutionary origin and function in non-mammalian immunity remain largely unexplored.. Here, we identify a Midnolin homolog in large yellow croaker (Larimichthys crocea).. A key finding is that the origin of Midnolin can be traced back to placozoans, the simplest known animals whose emergence predates that of sponges.

Article Title: Unveiling key genetic loci and candidate genes for brown spot disease resistance in rice based on QTL analysis
Article Snippet: .. Multiple sequence alignments was performed using BioEdit (version 7.0; https://bioedit.software.informer.com/ ) ( B ) Phylogenetic analysis of OsRBSq3 and its homologs was conducted using the maximum likelihood method with 1,000 bootstrap replicates in MEGA (version 12; https://www.megasoftware.net/ ) ( C ) Predicted protein–protein interactions of OsRBSq3 were analyzed using the STRING database (version 12; https://string-db.org/ ), showing associations with 10 proteins: TRE_ORYSJ, PMM, A0A0P0VPT7, A0A0P0W356, A0A0P0WVQ1, A0A0P0XFZ1, AMY1.1, AMY1.2, AMY1.3, and AMY1.4. ..

Article Title: Seroprevalence, Genetic Characteristics, and Pathogenicity of Korean Porcine Sapeloviruses.
Article Snippet: .. Multiple sequence alignments were performed using BioEdit software (version 7.0.5.3). ..

Protein-Protein interactions:

Article Title: Unveiling key genetic loci and candidate genes for brown spot disease resistance in rice based on QTL analysis
Article Snippet: .. Multiple sequence alignments was performed using BioEdit (version 7.0; https://bioedit.software.informer.com/ ) ( B ) Phylogenetic analysis of OsRBSq3 and its homologs was conducted using the maximum likelihood method with 1,000 bootstrap replicates in MEGA (version 12; https://www.megasoftware.net/ ) ( C ) Predicted protein–protein interactions of OsRBSq3 were analyzed using the STRING database (version 12; https://string-db.org/ ), showing associations with 10 proteins: TRE_ORYSJ, PMM, A0A0P0VPT7, A0A0P0W356, A0A0P0WVQ1, A0A0P0XFZ1, AMY1.1, AMY1.2, AMY1.3, and AMY1.4. ..



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