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InforMax Inc clustal multiple sequence alignment
Clustal Multiple Sequence Alignment, supplied by InforMax Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/multiple+sequence+alignment+analysis/clustal+multiple+sequence+alignment/pmc09682724-130-34-41
Average 90 stars, based on 1 article reviews
clustal multiple sequence alignment - by Bioz Stars, 2026-09
90/100 stars

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Sequencing:

Article Title: Novel glycosyltransferase genes involved in the acetan biosynthesis of Acetobacter xylinum.
Article Snippet: Novel aceQ and aceR genes involved in the acetan biosynthesis of Acetobacter xylinum were newly isolated.. The homology search with DNA Data Bank of Japan indicated that aceQ and aceR were glycosyltransferases.. Their gene-disrupted mutants were obtained by homologous recombination using the tetracycline resistance gene and the electroporation method.

Article Title: Molecular Detection of Bartonella spp. in China and St. Kitts
Article Snippet: .. These sequences were aligned using Clustal multiple sequence alignment in VectorNTI (Informax Inc., North Bethesda, MD, USA) to identify a highly conserved region of the 16S rRNA common to all the above Bartonella spp., but significantly different from the other species ( ). .. The primers and probes we developed were situated within the conserved region and synthesized by Integrated DNA Technologies (Coralville, IA, USA).

Article Title: Molecular Detection of Bartonella spp. in China and St. Kitts.
Article Snippet: .. Primers and Probes.)e 16S rRNA sequences for the 18 better-recognized Bartonella spp. on GenBank and eight closely related species were obtained from GenBank: B. quintana (NR_044748), B. henselae (AJ223778), B. clarridgeiae (NR_03696), B. elizabethae (AB246807), B. bacilliformis (NR_044743), B. bovis (NR_025121), B. capreoli (NR_025120), B. koehlerae (NR_024932), B. alsatica (NR_025272), B. grahamii (NR_029366), B. vinsonii subsp. berkhoffii (DQ2281315), B. vinsonii subsp. vinsonii (NR_037056), B. vinsonii subsp. arupensis (AF214558), B. doshiae (NR_029368), B. queenslandensis (EU111758), B. washoensis (AB519066), B. rattaustraliani (EU111753), B. tamiae (DQ395176), B. rochalimae (DQ683196), B. melophagi (AY724770), Bartonella sp. (U71322), Anaplasma phagocytophilum (AF172167), Anaplasma marginale (AF414873), Wolbachia (KF249715), Brucella melitensis (CP002932), Brucella chilestrain (AY513509), Rickettsia felis (NR_074483), R. rickettsii (L36217), and Coxiella burnetii (D89798) (Figure 1).)ese sequences were aligned using Clustal multiple sequence alignment in VectorNTI (Informax Inc., North Bethesda, MD, USA) to identify a highly conserved region of the 16S rRNA common to all the above Bartonella spp., but significantly different from the other species (Figure 1).)e primers and probes we developed were situated within the conserved region and synthesized by Integrated DNA Technologies (Coralville, IA, USA).)e pan-Bartonella FRET-qPCR we established amplifies a 304 bp target with the positions of primers and probes shown in Figure 1: forward primer: 5′-AGCGCACTCTTTTAGAGTGAGCGG-3′; reverse primer: 5′- CATGGCTGGATCAGGGTTGCC-3′; anchor probe: 5′- TCAGCCACACTGGGACTGAGACACG-(6-FAM)-3′; and reporter probe: 5′-(LCRed640)-CCAGACTCCTACGGGA GGCAGCA-phosphate-3′. ..

Article Title: Modification of the Folmer primers for the cytochrome c oxidase gene facilitates identification of mosquitoes
Article Snippet: Homogenates were stored at −20 °C until DNA extraction using the High Pure PCR Template Preparation Kit (Roche Diagnostics, Indianapolis, IN, USA) as described previously [ , ]. .. The COI sequences in GenBank ( https://www.ncbi.nlm.nih.gov/nucleotide/ ) for medically important mosquito species and those seen in Saint Kitts and Auburn which had multiple COI sequences from different authors in GenBank were aligned using Clustal multiple sequence alignment in Vector NTI (InforMax Inc., North Bethesda, MD, USA). ..

Article Title: The Lusitano horse maternal lineage based on mitochondrial D-loop sequence variation.
Article Snippet: The analysis of mitochondrial D-loop sequences (408 bp) from 145 Lusitano founder mares yielded a total of 27 different haplotypes.. The distribution of these mtDNA sequences was quite unequal, with the three most frequent ones representing 56.5% of all the Lusitano founder mares and 14 haplotypes (51.9%) being rare variants found only once in the sampling.. Four main haplotype clusters were present in the Lusitano breed.

Article Title: Study of the novel tissue-specific RNA polymerase II transcription factor
Article Snippet: It has been established that retrogenes lose introns and regulatory regions.. Most of them become pseudogenes, but some acquire tissue-specific functions.. In this study, a contrary situation is described, when a retrogene from Drosophila melanogaster performs the main functions and is expressed in all tissues, while the initial gene is active only in a small part of the male germ cells.

Article Title: Interspecies Recombination Contributes Minimally to Fluoroquinolone Resistance in Streptococcus pneumoniae
Article Snippet: .. The QRDR sequences of 71 pneumococcal isolates for which the ciprofloxacin MIC was $4 mg/ml (7) and 19 VGS blood isolates (6 S. sanguis, 8 S. mitis, and 5 S. oralis) for which the ciprofloxacin MIC was #2 mg/ml (8) were analyzed using the CLUSTAL multiple sequence alignment function of Vector NTI Suite 5.5 software (InforMax Inc., Bethesda, Md.). ..

Synthesized:

Article Title: Molecular Detection of Bartonella spp. in China and St. Kitts.
Article Snippet: .. Primers and Probes.)e 16S rRNA sequences for the 18 better-recognized Bartonella spp. on GenBank and eight closely related species were obtained from GenBank: B. quintana (NR_044748), B. henselae (AJ223778), B. clarridgeiae (NR_03696), B. elizabethae (AB246807), B. bacilliformis (NR_044743), B. bovis (NR_025121), B. capreoli (NR_025120), B. koehlerae (NR_024932), B. alsatica (NR_025272), B. grahamii (NR_029366), B. vinsonii subsp. berkhoffii (DQ2281315), B. vinsonii subsp. vinsonii (NR_037056), B. vinsonii subsp. arupensis (AF214558), B. doshiae (NR_029368), B. queenslandensis (EU111758), B. washoensis (AB519066), B. rattaustraliani (EU111753), B. tamiae (DQ395176), B. rochalimae (DQ683196), B. melophagi (AY724770), Bartonella sp. (U71322), Anaplasma phagocytophilum (AF172167), Anaplasma marginale (AF414873), Wolbachia (KF249715), Brucella melitensis (CP002932), Brucella chilestrain (AY513509), Rickettsia felis (NR_074483), R. rickettsii (L36217), and Coxiella burnetii (D89798) (Figure 1).)ese sequences were aligned using Clustal multiple sequence alignment in VectorNTI (Informax Inc., North Bethesda, MD, USA) to identify a highly conserved region of the 16S rRNA common to all the above Bartonella spp., but significantly different from the other species (Figure 1).)e primers and probes we developed were situated within the conserved region and synthesized by Integrated DNA Technologies (Coralville, IA, USA).)e pan-Bartonella FRET-qPCR we established amplifies a 304 bp target with the positions of primers and probes shown in Figure 1: forward primer: 5′-AGCGCACTCTTTTAGAGTGAGCGG-3′; reverse primer: 5′- CATGGCTGGATCAGGGTTGCC-3′; anchor probe: 5′- TCAGCCACACTGGGACTGAGACACG-(6-FAM)-3′; and reporter probe: 5′-(LCRed640)-CCAGACTCCTACGGGA GGCAGCA-phosphate-3′. ..

Software:

Article Title: The Lusitano horse maternal lineage based on mitochondrial D-loop sequence variation.
Article Snippet: The analysis of mitochondrial D-loop sequences (408 bp) from 145 Lusitano founder mares yielded a total of 27 different haplotypes.. The distribution of these mtDNA sequences was quite unequal, with the three most frequent ones representing 56.5% of all the Lusitano founder mares and 14 haplotypes (51.9%) being rare variants found only once in the sampling.. Four main haplotype clusters were present in the Lusitano breed.

Article Title: Interspecies Recombination Contributes Minimally to Fluoroquinolone Resistance in Streptococcus pneumoniae
Article Snippet: .. The QRDR sequences of 71 pneumococcal isolates for which the ciprofloxacin MIC was $4 mg/ml (7) and 19 VGS blood isolates (6 S. sanguis, 8 S. mitis, and 5 S. oralis) for which the ciprofloxacin MIC was #2 mg/ml (8) were analyzed using the CLUSTAL multiple sequence alignment function of Vector NTI Suite 5.5 software (InforMax Inc., Bethesda, Md.). ..



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