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CodonCode corporation multiple sequences alignment algorithm muscle
Multiple Sequences Alignment Algorithm Muscle, supplied by CodonCode corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/multiple+sequence+alignment+algorithm+muscle/multiple+sequence+alignment+program/pmc10082172-117-13-18
Average 90 stars, based on 1 article reviews
multiple sequences alignment algorithm muscle - by Bioz Stars, 2026-09
90/100 stars

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Article Title: Integrative taxonomy using the plant core DNA barcodes in Sumatra's Burseraceae.
Article Snippet: See the T erm s and C onditions (https://onlinelibrary.w iley.com /term s-and-conditions) on W iley O nline L ibrary for rules of use; O A articles are governed by the applicable C reative C om m ons L icense 4 of 14 | TEKLEMARIAM et al. fasta files of consensus sequences were aligned using the multiple sequences alignment algorithm Muscle in CodonCode aligner.

Sequencing:

Article Title: Hamster Polyomavirus Research: Past, Present, and Future
Article Snippet: .. Nucleotide sequences of HaPyV deposited in GenBank were compared using the multiple sequence alignment program MUSCLE embedded in CodonCode Aligner TM . ..

Article Title: Polymorphisms in oxytocin and α1a adrenergic receptor genes and their effects on production traits in dairy buffaloes.
Article Snippet: Polymorphisms in Oxytocin and α1a Adrenergic Receptor Genes and Their Effects on Production Traits in Dairy Buffaloes Daniele Neves Araújo, Gregório Miguel Ferreira de Camargo, Patrícia Dias da Silva Fonseca, Diercles Francisco Cardoso, Naudin Alejandro Hurtado-Lugo, Rúsbel Raul Aspilcueta-Borquis & Humberto Tonhati a Faculdade de Ciências Agrárias e Veterinárias, Departamento de Zootecnia, São Paulo State University (Unesp), Jaboticabal, Sao Paulo, Brazil Published online: 19 Feb 2015.

Article Title: Late Pleistocene molecular dating of past population fragmentation and demographic changes in African rain forest tree species supports the forest refuge hypothesis
Article Snippet: .. DNA sequence alignment was conducted for each gene using the muscle algorithm as implemented in codoncode aligner 4.0.4. (CodonCode Corporation, MA). ..

Article Title: Polymorphisms in the ghrelin gene and their associations with milk yield and quality in water buffaloes.
Article Snippet: The PCR product was sequenced for both primers (forward and reverse) by the dideoxynucleotide chain termination reaction, using an ABI Prism BigDye Terminator Cycle Sequencing Ready Reaction kit (Applied Biosystems Inc., Foster City, CA) and an ABI 3730 XL automatic sequencer (Applied Biosystems Inc.). .. The sequences of the ghrelin fragments analyzed were aligned by the CodonCode multiple sequence alignment program (http:// www.codoncode.com/aligner/download.htm), with the sequences published in the GenBank database taken as reference to identify the polymorphisms. .. The restriction enzymes were chosen by using the NEBcutter 2.0 program (available at http://tools.neb. com/NEBcutter2/).

Article Title: Identification of the vascular plants of Churchill, Manitoba, using a DNA barcode library
Article Snippet: .. Contigs were compared using the MUSCLE multiple sequence alignment algorithm [ ] implemented in CodonCode Aligner. ..

Generated:

Article Title: Integrative taxonomy using the plant core DNA barcodes in Sumatra's Burseraceae
Article Snippet: .. Subsequently, the generated fasta files of consensus sequences were aligned using the multiple sequences alignment algorithm Muscle in CodonCode aligner. .. Two locus DNA barcodes were concatenated using the aligned sequences of rbcL and matK in BioEdit Sequence Alignment Editor Software (Hall, ).



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