multiple sequence alignment algorithm muscle (Biomatters Ltd)

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Biomatters Ltd multiple sequence alignment algorithm muscle
Multiple Sequence Alignment Algorithm Muscle, supplied by Biomatters Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/multiple+sequence+alignment+algorithm+muscle/muscle/pm29094190-72-11-24
Average 90 stars, based on 1 article reviews

multiple sequence alignment algorithm muscle - by Bioz Stars, 2026-11

90/100 stars

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Article Title: Epidemiology of Giardia duodenalis infection in ruminant livestock and children in the Ismailia province of Egypt: insights by genetic characterization
Article Snippet: Therefore, alignments of single and in silico concatenated genes were produced using MUSCLE [ ] or ClustalW integrated subroutines of Geneious version 6.1.6 (Biomatters).

Article Title: Cellulamides: A New Family of Marine-Sourced Linear Peptides from the Underexplored Cellulosimicrobium Genus
Article Snippet: Multiple sequences alignment was carried out using MUSCLE [ ] from within the Geneious Prime 2023.2 software package (Biomatters, Auckland, New Zealand), and 1000 bootstraps applied.

Article Title: Ancient DNA from the extinct New Zealand grayling (<i>Prototroctes oxyrhynchus</i>) reveals evidence for Miocene marine dispersal
Article Snippet: samtools v.0.1.19 (Li et al., 2009) was used to select reads with a mapping Phred Quality Score > 25 (-q: 25), with duplicate reads discarded in Picard v.2.1.0 (http://broadinstitute.github.io/ picard/) using the MarkDuplicates.jar tool.

Software:

Article Title: Rhodobacterales use a unique L-threonine kinase for the assembly of the nucleotide loop of coenzyme B 12 .
Article Snippet: .. FASTA formatted sequences were aligned using the MUSCLE (Edgar, 2004) plugin within Geneious R8.1.7 software (Biomatters Ltd.) with 100 iterations and default settings. ..

Sequencing:

Article Title: ABC Transporter Subfamily E Is Critical for Gametogenesis and Eclosion in Lygus hesperus (Hemiptera: Miridae)
Article Snippet: .. Multiple sequence alignment of LhABCE with other representative insect ABCE proteins (Table S1) was generated using MUSCLE 5.1 [40] in Geneious Prime v2024.0.7 (Biomatters Ltd., Auckland, New Zealand). .. Total RNA was isolated from individual adult L. hesperus females at 1 and 6 d posteclosion using TRI Reagent Solution (Thermo Fisher Scientific, Carlsbad, CA, USA) and purified with an RNeasy Plus Mini kit (Qiagen, Germantown, MD, USA).

Article Title: ABC Transporter Subfamily E Is Critical for Gametogenesis and Eclosion in Lygus hesperus (Hemiptera: Miridae)
Article Snippet: .. Multiple sequence alignment of LhABCE with other representative insect ABCE proteins ( ) was generated using MUSCLE 5.1 [ ] in Geneious Prime v2024.0.7 (Biomatters Ltd., Auckland, New Zealand). .. Total RNA was isolated from individual adult L. hesperus females at 1 and 6 d post-eclosion using TRI Reagent Solution (Thermo Fisher Scientific, Carlsbad, CA, USA) and purified with an RNeasy Plus Mini kit (Qiagen, Germantown, MD, USA).

Generated:

Article Title: ABC Transporter Subfamily E Is Critical for Gametogenesis and Eclosion in Lygus hesperus (Hemiptera: Miridae)
Article Snippet: .. Multiple sequence alignment of LhABCE with other representative insect ABCE proteins ( ) was generated using MUSCLE 5.1 [ ] in Geneious Prime v2024.0.7 (Biomatters Ltd., Auckland, New Zealand). .. Total RNA was isolated from individual adult L. hesperus females at 1 and 6 d post-eclosion using TRI Reagent Solution (Thermo Fisher Scientific, Carlsbad, CA, USA) and purified with an RNeasy Plus Mini kit (Qiagen, Germantown, MD, USA).

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