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NimbleGen Systems GmbH nimblescan software
Nimblescan Software, supplied by NimbleGen Systems GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ms200+microarray+scanner/nimblescan+software/pmc04468653-101-18-20
Average 90 stars, based on 1 article reviews
nimblescan software - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Software:

Article Title: Candida albicans β-Glucan-Containing Particles Increase HO-1 Expression in Oral Keratinocytes via a Reactive Oxygen Species/p38 Mitogen-Activated Protein Kinase/Nrf2 Pathway
Article Snippet: Following hybridization and washing, the array slides were scanned using an Axon GenePix 4000B scanner (Molecular Devices Corporation, Sunnyvale, CA, USA) piloted by GenePix Pro (version 6.0) software (Axon). .. Scanned images were then imported into NimbleScan software (NimbleGen Systems, Inc., Madison, WI, USA). ..

Article Title: Intra-platform comparison of 25-mer and 60-mer oligonucleotide Nimblegen DNA microarrays
Article Snippet: Slides were scanned at 5 μm/pixel resolution using an Axon GenePix 4000B scanner (Molecular Devices Corporation, Sunnyvale, CA, USA) piloted by GenePix Pro 6.0 software (Axon). .. Scanned images (TIFF format) were then imported into NimbleScan software (Nimblegen Systems, Inc., Madison, WI, USA) for grid alignment and expression data analyses. ..

Article Title: All- trans retinoic acid alters the expression of the tight junction proteins Claudin-1 and -4 and epidermal barrier function-associated genes in the epidermis
Article Snippet: .. For the microarray data, the NimbleScan software (version 2.5; NimbleGen Systems, Inc.) was used to conduct grid alignment and analyze the expression profiles. ..

Article Title: AtPME3, a ubiquitous cell wall pectin methylesterase of Arabidopsis thaliana, alters the metabolism of cruciferin seed storage proteins during post-germinative growth of seedlings.
Article Snippet: After washing with the NimbleGen Wash Buffer Kit, slides were scanned at 2.5 μm pixel resolution using the Axon GenePix 4400 A scanner (Molecular Devices, LLC, Sunnyvale, CA, USA) piloted by GenePix Pro 7 software (Molecular Devices). .. Scanned images (TIFF format) were imported into Nimblescan software (NimbleGen Systems, Inc., Madison, WI, USA) for metrics parameter control. ..

Article Title: Expression of anti-fungal peptide, β-defensin 118 in oral fibroblasts induced by C. albicans β-glucan-containing particles
Article Snippet: Following hybridization and washing, array slides were scanned using an Axon GenePix 4000B scanner (Molecular Devices Corporation, Sunnyvale, CA, USA) piloted by the GenePix Pro 6.0 software (Axon). .. The scanned images were imported using the NimbleScan software (NimbleGen Systems, Inc., Madison, WI, USA). ..

Article Title: Alcohol-induced suppression of KDM6B dysregulates the mineralization potential in dental pulp stem cells
Article Snippet: .. Resulting score for each probe was −log 10 (p value) from the windowed KS test around the probe and was assigned as “p-value.” NimbleScan software (NimbleGen Systems) detects peaks by searching for at least two probes above a p value minimum cutoff (−log 10 ) of 2. ..

Expressing:

Article Title: Intra-platform comparison of 25-mer and 60-mer oligonucleotide Nimblegen DNA microarrays
Article Snippet: Slides were scanned at 5 μm/pixel resolution using an Axon GenePix 4000B scanner (Molecular Devices Corporation, Sunnyvale, CA, USA) piloted by GenePix Pro 6.0 software (Axon). .. Scanned images (TIFF format) were then imported into NimbleScan software (Nimblegen Systems, Inc., Madison, WI, USA) for grid alignment and expression data analyses. ..

Article Title: All- trans retinoic acid alters the expression of the tight junction proteins Claudin-1 and -4 and epidermal barrier function-associated genes in the epidermis
Article Snippet: .. For the microarray data, the NimbleScan software (version 2.5; NimbleGen Systems, Inc.) was used to conduct grid alignment and analyze the expression profiles. ..

other:

Article Title: Optimization and clinical validation of a pathogen detection microarray
Article Snippet: Signal intensities were extracted using Nimblescan 2.1 software (NimbleGen Systems, Madison, WI, USA).

Article Title: Candida albicans β-Glucan-Containing Particles Increase HO-1 Expression in Oral Keratinocytes via a Reactive Oxygen Species/p38 Mitogen-Activated Protein Kinase/Nrf2 Pathway
Article Snippet: Scanned images were then imported into NimbleScan 194 software (NimbleGen Systems, Inc., Madison, WI, USA).

Microarray:

Article Title: All- trans retinoic acid alters the expression of the tight junction proteins Claudin-1 and -4 and epidermal barrier function-associated genes in the epidermis
Article Snippet: .. For the microarray data, the NimbleScan software (version 2.5; NimbleGen Systems, Inc.) was used to conduct grid alignment and analyze the expression profiles. ..

Control:

Article Title: AtPME3, a ubiquitous cell wall pectin methylesterase of Arabidopsis thaliana, alters the metabolism of cruciferin seed storage proteins during post-germinative growth of seedlings.
Article Snippet: After washing with the NimbleGen Wash Buffer Kit, slides were scanned at 2.5 μm pixel resolution using the Axon GenePix 4400 A scanner (Molecular Devices, LLC, Sunnyvale, CA, USA) piloted by GenePix Pro 7 software (Molecular Devices). .. Scanned images (TIFF format) were imported into Nimblescan software (NimbleGen Systems, Inc., Madison, WI, USA) for metrics parameter control. ..

Significance Assay:

Article Title: Alcohol-induced suppression of KDM6B dysregulates the mineralization potential in dental pulp stem cells
Article Snippet: .. Resulting score for each probe was −log 10 (p value) from the windowed KS test around the probe and was assigned as “p-value.” NimbleScan software (NimbleGen Systems) detects peaks by searching for at least two probes above a p value minimum cutoff (−log 10 ) of 2. ..



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