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microarray suite, microdb, data mining tool software v. 5.0  (Thermo Fisher)


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    Structured Review

    Thermo Fisher microarray suite, microdb, data mining tool software v. 5.0
    Microarray Suite, Microdb, Data Mining Tool Software V. 5.0, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+suite+data+mining+tool+software/pmc05588173-127-4-12
    Average 90 stars, based on 1 article reviews
    microarray suite, microdb, data mining tool software v. 5.0 - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Expressing:

    Article Title: Networks of intergenic long-range enhancers and snpRNAs drive castration-resistant phenotype of prostate cancer and contribute to pathogenesis of multiple common human disorders
    Article Snippet: We processed the microarray data using the Affymetrix Microarray Suite version 5.0 software and performed statistical analysis of N at ur e P re ce di ng s : h dl :1 01 01 /n pr e. 20 11 .6 06 9. .. 1 : P os te d 27 J un 2 01 1 the expression data set using the Affymetrix MicroDB and Affymetrix DMT software. .. The Pearson correlation coefficient for individual test samples and the appropriate reference standard were determined using GraphPad Prism version 4.00 software (GraphPad Software).

    Article Title: Networks of intergenic long-range enhancers and snpRNAs drive castration-resistant phenotype of prostate cancer and contribute to pathogenesis of multiple common human disorders
    Article Snippet: The concordance analysis of differential gene expression across the data sets was performed using Affymetrix MicroDB version 3.0 and DMT version 3.0 software as described previously in references 39 – 42 . .. We processed the microarray data using the Affymetrix Microarray Suite version 5.0 software and performed statistical analysis of the expression data set using the Affymetrix MicroDB and Affymetrix DMT software. .. The Pearson correlation coefficient for individual test samples and the appropriate reference standard were determined using GraphPad Prism version 4.00 software (GraphPad Software).

    Article Title: Methods and compositions for predicting death from cancer and prostate cancer survival using gene expression signatures
    Article Snippet: The concordance analysis of differential gene expression across the data sets was performed using Affymetrix MicroDB v. 3.0 and DMT v.3.0 software as described earlier (11, 13). .. We processed the microarray data using the Affymetrix Microarray Suite v.5.0 software and performed statistical analysis of expression data set using the Affymetrix MicroDB and Affymetrix DMT software. ..

    Software:

    Article Title: Networks of intergenic long-range enhancers and snpRNAs drive castration-resistant phenotype of prostate cancer and contribute to pathogenesis of multiple common human disorders
    Article Snippet: We processed the microarray data using the Affymetrix Microarray Suite version 5.0 software and performed statistical analysis of N at ur e P re ce di ng s : h dl :1 01 01 /n pr e. 20 11 .6 06 9. .. 1 : P os te d 27 J un 2 01 1 the expression data set using the Affymetrix MicroDB and Affymetrix DMT software. .. The Pearson correlation coefficient for individual test samples and the appropriate reference standard were determined using GraphPad Prism version 4.00 software (GraphPad Software).

    Article Title: Methods and compositions for predicting death from cancer and prostate cancer survival using gene expression signatures
    Article Snippet: 40-50% of the surveyed genes were called present by the Affymetrix Microarray Suite 5.0 software in these experiments. .. The concordance analysis of differential gene expression across the data sets was performed using Affymetrix MicroDB v. 3.0 and DMT v.3.0 software as described earlier (11, 13). .. We processed the microarray data using the Affymetrix Microarray Suite v.5.0 software and performed statistical analysis of expression data set using the Affymetrix MicroDB and Affymetrix DMT software.

    Article Title: Analysis of resistance-associated gene expression in docetaxel-resistant prostate cancer cells
    Article Snippet: 3.0 (Istech Corp., Seoul, Korea) was used for analyzing the CEL file data. .. The Affymetrix Microarray Suite, MicroDB, and Data Mining Tool software v. 5.0 (Thermo Fisher Scientific, Inc.) were used to annotate 54,120 probe sets with 17,084 genes from the UniGene database. ..

    Article Title: Rapamycin Inhibits Multiple Stages of c-Neu/ErbB2-induced Tumor Progression in a Transgenic Mouse Model of HER2 Positive Breast Cancer
    Article Snippet: Gene expression microarray analysis of age-matched wild type glands (n=3 pools of 5 mice each), and primary tumors (n=7) using the Affymetrix (Santa Clara, CA, USA) Murine U74Av2 GeneChip Array have been previously described ( 19 ). .. Briefly, computational analyses were performed with Microarray Suite (v.5.0, Affymetrix), Data Mining Tool (DMT v.3.0, Affymetrix), MicroDB (v.3.0, Affymetrix), and GeneSpring (v.6.0, Silicon Genetics) software. .. Probes that received a call of “absent” by Affymetrix detection call on all GeneChips were not analyzed.

    Article Title: Networks of intergenic long-range enhancers and snpRNAs drive castration-resistant phenotype of prostate cancer and contribute to pathogenesis of multiple common human disorders
    Article Snippet: The concordance analysis of differential gene expression across the data sets was performed using Affymetrix MicroDB version 3.0 and DMT version 3.0 software as described previously in references 39 – 42 . .. We processed the microarray data using the Affymetrix Microarray Suite version 5.0 software and performed statistical analysis of the expression data set using the Affymetrix MicroDB and Affymetrix DMT software. .. The Pearson correlation coefficient for individual test samples and the appropriate reference standard were determined using GraphPad Prism version 4.00 software (GraphPad Software).

    Article Title: Methods and compositions for predicting death from cancer and prostate cancer survival using gene expression signatures
    Article Snippet: The concordance analysis of differential gene expression across the data sets was performed using Affymetrix MicroDB v. 3.0 and DMT v.3.0 software as described earlier (11, 13). .. We processed the microarray data using the Affymetrix Microarray Suite v.5.0 software and performed statistical analysis of expression data set using the Affymetrix MicroDB and Affymetrix DMT software. ..

    Gene Expression:

    Article Title: Methods and compositions for predicting death from cancer and prostate cancer survival using gene expression signatures
    Article Snippet: 40-50% of the surveyed genes were called present by the Affymetrix Microarray Suite 5.0 software in these experiments. .. The concordance analysis of differential gene expression across the data sets was performed using Affymetrix MicroDB v. 3.0 and DMT v.3.0 software as described earlier (11, 13). .. We processed the microarray data using the Affymetrix Microarray Suite v.5.0 software and performed statistical analysis of expression data set using the Affymetrix MicroDB and Affymetrix DMT software.

    Microarray:

    Article Title: Analysis of resistance-associated gene expression in docetaxel-resistant prostate cancer cells
    Article Snippet: 3.0 (Istech Corp., Seoul, Korea) was used for analyzing the CEL file data. .. The Affymetrix Microarray Suite, MicroDB, and Data Mining Tool software v. 5.0 (Thermo Fisher Scientific, Inc.) were used to annotate 54,120 probe sets with 17,084 genes from the UniGene database. ..

    Article Title: Rapamycin Inhibits Multiple Stages of c-Neu/ErbB2-induced Tumor Progression in a Transgenic Mouse Model of HER2 Positive Breast Cancer
    Article Snippet: Gene expression microarray analysis of age-matched wild type glands (n=3 pools of 5 mice each), and primary tumors (n=7) using the Affymetrix (Santa Clara, CA, USA) Murine U74Av2 GeneChip Array have been previously described ( 19 ). .. Briefly, computational analyses were performed with Microarray Suite (v.5.0, Affymetrix), Data Mining Tool (DMT v.3.0, Affymetrix), MicroDB (v.3.0, Affymetrix), and GeneSpring (v.6.0, Silicon Genetics) software. .. Probes that received a call of “absent” by Affymetrix detection call on all GeneChips were not analyzed.

    Article Title: Networks of intergenic long-range enhancers and snpRNAs drive castration-resistant phenotype of prostate cancer and contribute to pathogenesis of multiple common human disorders
    Article Snippet: The concordance analysis of differential gene expression across the data sets was performed using Affymetrix MicroDB version 3.0 and DMT version 3.0 software as described previously in references 39 – 42 . .. We processed the microarray data using the Affymetrix Microarray Suite version 5.0 software and performed statistical analysis of the expression data set using the Affymetrix MicroDB and Affymetrix DMT software. .. The Pearson correlation coefficient for individual test samples and the appropriate reference standard were determined using GraphPad Prism version 4.00 software (GraphPad Software).

    Article Title: Methods and compositions for predicting death from cancer and prostate cancer survival using gene expression signatures
    Article Snippet: The concordance analysis of differential gene expression across the data sets was performed using Affymetrix MicroDB v. 3.0 and DMT v.3.0 software as described earlier (11, 13). .. We processed the microarray data using the Affymetrix Microarray Suite v.5.0 software and performed statistical analysis of expression data set using the Affymetrix MicroDB and Affymetrix DMT software. ..

    other:

    Article Title: Comparative genomic characterization of citrus-associated Xylella fastidiosa strains
    Article Snippet: These data were consolidated into a GATC database with Affymetrix MicroDB v.2.0 and the averages from all six readings were submitted to scatter plot visualization with Affymetrix Data Mining Tool v.2.0.

    Article Title: Rapamycin inhibits multiple stages of c-Neu/ErbB2–induced tumor progression in a transgenic mouse model of HER2-positive breast cancer
    Article Snippet: Briefly, computational analyses were done with Microarray Suite (v.5.0, Affymetrix), Data Mining Tool (DMT v.3.0, Affymetrix), MicroDB (v.3.0, Affymetrix), and GeneSpring (v.6.0, Silicon Genetics) software.



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