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mas5 algorithm microarray suite version 5 software  (Thermo Fisher)


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    Thermo Fisher mas5 algorithm microarray suite version 5 software
    Mas5 Algorithm Microarray Suite Version 5 Software, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+suite+algorithm+version+5+(mas5/pmc02873685-54-13-15
    Average 90 stars, based on 1 article reviews
    mas5 algorithm microarray suite version 5 software - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Expressing:

    Article Title: Comparative analysis and integrative classification of NCI60 cell lines and primary tumors using gene expression profiling data
    Article Snippet: .. The Affymetrix MAS5 algorithm provided the "Absent/Present" calls for each probe set to indicate the expression level is below/above the threshold of detection. ..


    Article Title: Transcriptional changes associated with breast cancer occur as normal human mammary epithelial cells overcome senescence barriers and become immortalized
    Article Snippet: .. Affymetrix's MAS5 algorithm was used to generate expression measures including Signal values and Absent/Present calls (Affymetrix (2001) Microarray Suite User Guide , Version 5. ..

    Produced:

    Article Title: Comparative analysis and integrative classification of NCI60 cell lines and primary tumors using gene expression profiling data
    Article Snippet: Gene expression data of lung [ ], prostate [ ], CNS [ ] cancers and leukemia [ ] were originally generated with Affymetrix MAS4 software. .. We downloaded the .cel files and produced more accurate gene expression data using Affymetrix MAS5 algorithm with trimmed mean values normalized to 500. ..

    Gene Expression:

    Article Title: Comparative analysis and integrative classification of NCI60 cell lines and primary tumors using gene expression profiling data
    Article Snippet: Gene expression data of lung [ ], prostate [ ], CNS [ ] cancers and leukemia [ ] were originally generated with Affymetrix MAS4 software. .. We downloaded the .cel files and produced more accurate gene expression data using Affymetrix MAS5 algorithm with trimmed mean values normalized to 500. ..

    Microarray:

    Article Title: Transcriptional changes associated with breast cancer occur as normal human mammary epithelial cells overcome senescence barriers and become immortalized
    Article Snippet: .. Affymetrix's MAS5 algorithm was used to generate expression measures including Signal values and Absent/Present calls (Affymetrix (2001) Microarray Suite User Guide , Version 5. ..

    Article Title: High Chromosome Number in hematological cancer cell lines is a Negative Predictor of Response to the inhibition of Aurora B and C by GSK1070916
    Article Snippet: .. Transcript abundance was estimated by normalizing all probe signal intensities were normalized to a value of 150 using the mas5 algorithm in the Affymetrix Microarray Analysis Suite 5.0. ..



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    Image Search Results


    Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the MAS5 algorithm.

    Journal: BMC Genomics

    Article Title: Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues

    doi: 10.1186/1471-2164-10-324

    Figure Lengend Snippet: Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the MAS5 algorithm.

    Article Snippet: Secondly, analysis was performed on the Breast Cancer DSA with the Affymetrix Microarray Suite version 5 (MAS5) algorithms, which uses the probe-pair data to calculate the detection call.

    Techniques: Expressing, Microarray