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microarray suite version 5 (mas5, algorithm  (Thermo Fisher)


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    Structured Review

    Thermo Fisher microarray suite version 5 (mas5, algorithm
    Microarray Suite Version 5 (Mas5, Algorithm, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+suite+algorithm+version+5+(mas5/pmc04098797-176-16-21
    Average 90 stars, based on 1 article reviews
    microarray suite version 5 (mas5, algorithm - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Generated:

    Article Title: Cidofovir selectivity is based on the different response of normal and cancer cells to DNA damage
    Article Snippet: .. The detection (Present/Absent) call generated by the Affymetrix microarray suite version 5 software (MAS 5.0) was used to remove probe sets that were not reliable detected in any of the microarrays before further analysis. ..

    Microarray:

    Article Title: Cidofovir selectivity is based on the different response of normal and cancer cells to DNA damage
    Article Snippet: .. The detection (Present/Absent) call generated by the Affymetrix microarray suite version 5 software (MAS 5.0) was used to remove probe sets that were not reliable detected in any of the microarrays before further analysis. ..

    Article Title: Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues
    Article Snippet: Since the Breast Cancer DSA is based on the Affymetrix GeneChip technology, normalisation and transformation of the raw data was performed using the robust multi-array analysis (RMA) [ ] to obtain relative measurements for each probe sets. .. Secondly, analysis was performed on the Breast Cancer DSA with the Affymetrix Microarray Suite version 5 (MAS5) algorithms, which uses the probe-pair data to calculate the detection call. ..

    Article Title: Regulation of genes affecting body size and innate immunity by the DBL-1/BMP-like pathway in Caenorhabditis elegans
    Article Snippet: .. Microarray Suite Version 5 software (Affymetrix, Santa Clara, CA) was used to generate .cel files. .. Probe ProfilerTMsoftware (v1.3.11) (Corimbia Inc, Berkeley, CA) was used to convert .cel file intensity data into quantitative estimates of gene expression.

    Article Title: Classification of dendritic cell phenotypes from gene expression data
    Article Snippet: Briefly, human DCs were differentiated from human circulating monocytes and treated with M. tuberculosis H37Rv at multiplicity of infection of 1 for 4, 18 and 48 h. Total RNA was extracted, labelled and hybridised to a Human U133A Affymetrix GeneChip ® as described in [ ]. .. For all the arrays, both with human and mouse sets, signal summarisation was performed using the Affymetrix GeneChip Operating Software ® (GCOS) and the MicroArray Suite version 5 (MAS 5.0) algorithm with scaling intensity target set to 100. .. Mouse Data : three kinds of arrays (Affymetrix ® MOE430 2.0, MOE430A 2.0 and MGU74Av2) were used.

    Article Title: SIMPL Enhancement of Tumor Necrosis Factor-α Dependent p65-MED1 Complex Formation Is Required for Mammalian Hematopoietic Stem and Progenitor Cell Function
    Article Snippet: Total cellular RNA, isolated from untreated and TNFα treated (rhTNFα 10 ng/ml, 1 h) SIMPL −/− or littermate control MEFs was converted to cRNA and used to identify expressed genes (IU Center for Medical Genomics Microarray Core, Affymetrix Mouse Gene 1.0 ST GeneChip®). .. Data was extracted with Affymetrix Microarray Suite version 5 software and exported to a MicroArray Data Portal in the Core Facility. ..

    Article Title: Text mining of full-text journal articles combined with gene expression analysis reveals a relationship between sphingosine-1-phosphate and invasiveness of a glioblastoma cell line
    Article Snippet: Scanned the probe arrays in the Affymetrix GeneChip Scanner. .. The fluorescent intensity data from Affymetrix Microarray Suite Version 5 (MAS 5.0) were exported as CEL files and imported into Probe Profiler (Corimbia, Berkley, CA), which uses a model-based approach for statistical analysis of expression data. ..

    Software:

    Article Title: Cidofovir selectivity is based on the different response of normal and cancer cells to DNA damage
    Article Snippet: .. The detection (Present/Absent) call generated by the Affymetrix microarray suite version 5 software (MAS 5.0) was used to remove probe sets that were not reliable detected in any of the microarrays before further analysis. ..

    Article Title: Regulation of genes affecting body size and innate immunity by the DBL-1/BMP-like pathway in Caenorhabditis elegans
    Article Snippet: .. Microarray Suite Version 5 software (Affymetrix, Santa Clara, CA) was used to generate .cel files. .. Probe ProfilerTMsoftware (v1.3.11) (Corimbia Inc, Berkeley, CA) was used to convert .cel file intensity data into quantitative estimates of gene expression.

    Article Title: Classification of dendritic cell phenotypes from gene expression data
    Article Snippet: Briefly, human DCs were differentiated from human circulating monocytes and treated with M. tuberculosis H37Rv at multiplicity of infection of 1 for 4, 18 and 48 h. Total RNA was extracted, labelled and hybridised to a Human U133A Affymetrix GeneChip ® as described in [ ]. .. For all the arrays, both with human and mouse sets, signal summarisation was performed using the Affymetrix GeneChip Operating Software ® (GCOS) and the MicroArray Suite version 5 (MAS 5.0) algorithm with scaling intensity target set to 100. .. Mouse Data : three kinds of arrays (Affymetrix ® MOE430 2.0, MOE430A 2.0 and MGU74Av2) were used.

    Article Title: SIMPL Enhancement of Tumor Necrosis Factor-α Dependent p65-MED1 Complex Formation Is Required for Mammalian Hematopoietic Stem and Progenitor Cell Function
    Article Snippet: Total cellular RNA, isolated from untreated and TNFα treated (rhTNFα 10 ng/ml, 1 h) SIMPL −/− or littermate control MEFs was converted to cRNA and used to identify expressed genes (IU Center for Medical Genomics Microarray Core, Affymetrix Mouse Gene 1.0 ST GeneChip®). .. Data was extracted with Affymetrix Microarray Suite version 5 software and exported to a MicroArray Data Portal in the Core Facility. ..

    other:

    Article Title: Effects of filtering by Present call on analysis of microarray experiments
    Article Snippet: The Affymetrix Microarray Suite version 5 (MAS5) algorithm uses the probe-pair data in different ways to calculate the detection call and the signal.

    Terminal Restriction Fragment Length Polymorphism:

    Article Title: Differential plant invasiveness is not always driven by host promiscuity with bacterial symbionts
    Article Snippet: We digested the PCR product using the restriction enzyme MspI (New England BioLabs) in 30 μl reaction mixtures, and analysed the fragment sizes using a 3130×l genetic analyzer (Applied Biosystems, Warrington, United Kingdom). .. We used GeneMapper version 5 (Life Technologies, Grand Island, NY, USA) to examine T-RFLP profiles and included peaks over 50 bp for further analysis. ..

    Expressing:

    Article Title: Text mining of full-text journal articles combined with gene expression analysis reveals a relationship between sphingosine-1-phosphate and invasiveness of a glioblastoma cell line
    Article Snippet: Scanned the probe arrays in the Affymetrix GeneChip Scanner. .. The fluorescent intensity data from Affymetrix Microarray Suite Version 5 (MAS 5.0) were exported as CEL files and imported into Probe Profiler (Corimbia, Berkley, CA), which uses a model-based approach for statistical analysis of expression data. ..



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    Image Search Results


    Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the MAS5 algorithm.

    Journal: BMC Genomics

    Article Title: Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues

    doi: 10.1186/1471-2164-10-324

    Figure Lengend Snippet: Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the MAS5 algorithm.

    Article Snippet: Secondly, analysis was performed on the Breast Cancer DSA with the Affymetrix Microarray Suite version 5 (MAS5) algorithms, which uses the probe-pair data to calculate the detection call.

    Techniques: Expressing, Microarray