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microarray gene expression analysis  (Agendia BV)

 
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    Agendia BV microarray gene expression analysis
    Microarray Gene Expression Analysis, supplied by Agendia BV, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+gene+expression+analysis/microarray+analysis/pm39602125-66-2-9
    Average 90 stars, based on 1 article reviews
    microarray gene expression analysis - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Microarray:

    Article Title: Association between Obesity, Race or Ethnicity, and Luminal Subtypes of Breast Cancer
    Article Snippet: .. MammaPrint and BluePrint are based on microarray gene expression analysis [ , ] performed at the Agendia Laboratory (Irvine, CA, USA). ..

    Article Title: An international study comparing conventional versus mRNA level testing (TargetPrint) for ER, PR, and HER2 status of breast cancer.
    Article Snippet: To compare results from messenger RNA (mRNA)-based TargetPrint testing with those from immunohistochemistry (IHC) and in situ hybridization (ISH) conducted according to local standard procedures at hospitals worldwide.. Tumor samples were prospectively obtained from 806 patients at 22 hospitals.. The mRNA level of estrogen receptor (ER), progesterone receptor (PR), and human epidermal growth factor receptor 2 (HER2) was assessed by TargetPrint quantitative gene expression readouts.

    Article Title: Comparison of molecular subtyping with BluePrint, MammaPrint, and TargetPrint to local clinical subtyping in breast cancer patients.
    Article Snippet: Purpose.. To compare breast cancer subtyping with the three centrally assessed microarray-based assays BluePrint, MammaPrint, and TargetPrint with locally assessed clinical subtyping using immunohistochemistry (IHC) and fluorescence in situ hybridization (FISH).. Methods.

    Article Title: Association ofSOD3 promoter DNA methylation with its down-regulation in breast carcinomas
    Article Snippet: RNAs were extracted by using the QIAGEN RNeasy FFPE kit. .. Agendia microarray analysis The gene array expression profiling was performed by Agendia Inc. USA. ..

    Article Title: The multigene signature MammaPrint impacts on multidisciplinary team decisions in ER + , HER2 − early breast cancer
    Article Snippet: .. Microarray analysis (RNA labelling, microarray hybridisation and scanning) was performed at the centralised Agendia Laboratories blinded for clinical and histological data. ..

    Article Title: Abstracts and Case Studies From the College of American Pathologists 2012 Annual Meeting (CAP '12)
    Article Snippet: Abstracts and Case Studies From the College of American Pathologists 2012 Annual Meeting (CAP ’12)s and Case Studies From the College of American Pathologists 2012 Annual Meeting (CAP ’12) Abstract and case study poster sessions will be conducted during the 2012 College of American Pathologists Annual Meeting, which is scheduled for September 9 to 12, 2012.. The meeting will take place at the Manchester Grand Hyatt San Diego, Calif.. The poster sessions will occur in the Elizabeth Ballroom Foyer.

    Article Title: Dissecting Biological Risk Using Genomic Assays-Implications for Extended Endocrine Therapy and Beyond.
    Article Snippet: .. MammaPrint, a microarray gene expression analysis, was performed at Agendia Inc.38-41 Samples contained 30% tumor cells or greater, and extracted RNA from formalin-fixed paraffin-embedded tissue was converted to cDNA, amplified, labeled, and hybridized onto Agendia’s diagnostic arrays (custom-designed, Agilent Technologies). ..

    Gene Expression:

    Article Title: Association between Obesity, Race or Ethnicity, and Luminal Subtypes of Breast Cancer
    Article Snippet: .. MammaPrint and BluePrint are based on microarray gene expression analysis [ , ] performed at the Agendia Laboratory (Irvine, CA, USA). ..

    Article Title: Dissecting Biological Risk Using Genomic Assays-Implications for Extended Endocrine Therapy and Beyond.
    Article Snippet: .. MammaPrint, a microarray gene expression analysis, was performed at Agendia Inc.38-41 Samples contained 30% tumor cells or greater, and extracted RNA from formalin-fixed paraffin-embedded tissue was converted to cDNA, amplified, labeled, and hybridized onto Agendia’s diagnostic arrays (custom-designed, Agilent Technologies). ..

    Labeling:

    Article Title: An international study comparing conventional versus mRNA level testing (TargetPrint) for ER, PR, and HER2 status of breast cancer.
    Article Snippet: To compare results from messenger RNA (mRNA)-based TargetPrint testing with those from immunohistochemistry (IHC) and in situ hybridization (ISH) conducted according to local standard procedures at hospitals worldwide.. Tumor samples were prospectively obtained from 806 patients at 22 hospitals.. The mRNA level of estrogen receptor (ER), progesterone receptor (PR), and human epidermal growth factor receptor 2 (HER2) was assessed by TargetPrint quantitative gene expression readouts.

    Article Title: Comparison of molecular subtyping with BluePrint, MammaPrint, and TargetPrint to local clinical subtyping in breast cancer patients.
    Article Snippet: Purpose.. To compare breast cancer subtyping with the three centrally assessed microarray-based assays BluePrint, MammaPrint, and TargetPrint with locally assessed clinical subtyping using immunohistochemistry (IHC) and fluorescence in situ hybridization (FISH).. Methods.

    Article Title: Dissecting Biological Risk Using Genomic Assays-Implications for Extended Endocrine Therapy and Beyond.
    Article Snippet: .. MammaPrint, a microarray gene expression analysis, was performed at Agendia Inc.38-41 Samples contained 30% tumor cells or greater, and extracted RNA from formalin-fixed paraffin-embedded tissue was converted to cDNA, amplified, labeled, and hybridized onto Agendia’s diagnostic arrays (custom-designed, Agilent Technologies). ..

    Hybridization:

    Article Title: An international study comparing conventional versus mRNA level testing (TargetPrint) for ER, PR, and HER2 status of breast cancer.
    Article Snippet: To compare results from messenger RNA (mRNA)-based TargetPrint testing with those from immunohistochemistry (IHC) and in situ hybridization (ISH) conducted according to local standard procedures at hospitals worldwide.. Tumor samples were prospectively obtained from 806 patients at 22 hospitals.. The mRNA level of estrogen receptor (ER), progesterone receptor (PR), and human epidermal growth factor receptor 2 (HER2) was assessed by TargetPrint quantitative gene expression readouts.

    Article Title: Comparison of molecular subtyping with BluePrint, MammaPrint, and TargetPrint to local clinical subtyping in breast cancer patients.
    Article Snippet: Purpose.. To compare breast cancer subtyping with the three centrally assessed microarray-based assays BluePrint, MammaPrint, and TargetPrint with locally assessed clinical subtyping using immunohistochemistry (IHC) and fluorescence in situ hybridization (FISH).. Methods.

    Article Title: The multigene signature MammaPrint impacts on multidisciplinary team decisions in ER + , HER2 − early breast cancer
    Article Snippet: .. Microarray analysis (RNA labelling, microarray hybridisation and scanning) was performed at the centralised Agendia Laboratories blinded for clinical and histological data. ..

    Expressing:

    Article Title: Association ofSOD3 promoter DNA methylation with its down-regulation in breast carcinomas
    Article Snippet: RNAs were extracted by using the QIAGEN RNeasy FFPE kit. .. Agendia microarray analysis The gene array expression profiling was performed by Agendia Inc. USA. ..

    Formalin-fixed Paraffin-Embedded:

    Article Title: Dissecting Biological Risk Using Genomic Assays-Implications for Extended Endocrine Therapy and Beyond.
    Article Snippet: .. MammaPrint, a microarray gene expression analysis, was performed at Agendia Inc.38-41 Samples contained 30% tumor cells or greater, and extracted RNA from formalin-fixed paraffin-embedded tissue was converted to cDNA, amplified, labeled, and hybridized onto Agendia’s diagnostic arrays (custom-designed, Agilent Technologies). ..

    Amplification:

    Article Title: Dissecting Biological Risk Using Genomic Assays-Implications for Extended Endocrine Therapy and Beyond.
    Article Snippet: .. MammaPrint, a microarray gene expression analysis, was performed at Agendia Inc.38-41 Samples contained 30% tumor cells or greater, and extracted RNA from formalin-fixed paraffin-embedded tissue was converted to cDNA, amplified, labeled, and hybridized onto Agendia’s diagnostic arrays (custom-designed, Agilent Technologies). ..

    Diagnostic Assay:

    Article Title: Dissecting Biological Risk Using Genomic Assays-Implications for Extended Endocrine Therapy and Beyond.
    Article Snippet: .. MammaPrint, a microarray gene expression analysis, was performed at Agendia Inc.38-41 Samples contained 30% tumor cells or greater, and extracted RNA from formalin-fixed paraffin-embedded tissue was converted to cDNA, amplified, labeled, and hybridized onto Agendia’s diagnostic arrays (custom-designed, Agilent Technologies). ..



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    NAC61 expression analysis. (A) NAC61 expression behavior in grapevine organs throughout development (bar plot) and compared in the heatmap (logarithmic value) with that of NAC60 and NAC33. The data were retrieved from the atlas transcriptomic dataset of cv. ‘Corvina’ ( Fasoli et al ., 2012 ). Each value represents the mean ±SD of three biological replicates. (B) Correlation between NAC61 expression level and sugar content in grape berries sampled from fruit set to maturity in cv. ‘Cabernet Sauvignon’ and cv. ‘Pinot noir’ ( Fasoli et al ., 2018 ). The black line represents the trend of the averaged values of the two varieties. The R 2 values shown correspond to the fitting of different polynomial regressions to each corresponding group of samples (orange for cv. ‘Cabernet Sauvignon’ samples, blue for cv. ‘Pinot noir’ samples, and black for the entire set of samples). (C) Correlation between NAC61 expression level and sugar content in grape berries sampled during post-harvest dehydration in six different varieties ( Zenoni et al ., 2016 ). (D) Correlation between NAC61 expression level and berry weight loss in cv. ‘Corvina’ berries sampled during traditional long and forced short post-harvest dehydration processes ( Zenoni et al ., 2020 ). Expression values were determined by <t>microarray</t> analysis and each value represents the mean ±SD from three biological replicates. (E) NAC61 GCNs based on berry, leaf, and tissue-independent (TI) datasets. Left, Venn diagram showing exclusive and shared genes based on the three datasets; right, three-dimensional plot of co-expressed genes in which NAC, WRKY, and ZIP family members already described as having involvement in berry ripening and/or stress responses are indicated.
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    Summary of apoptosis pathways in human and Oncopig cells. Summarized apoptotic pathways altered by gemcitabine treatment in Oncopig BCCL and 5637 cells evaluated by <t>microarray.</t> There were multiple possible cellular pathways involved in apoptosis induction, such as: TP53INP1/P53/BCL/BAX/CASPASE mitochondrial intrinsical pathway; TP53INP1/TP73 activation; FAS/RB1/GADD45B/CASPASE pathway and cell rounding up by RND1 and/or ZMYM6.
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    Image Search Results


    NAC61 expression analysis. (A) NAC61 expression behavior in grapevine organs throughout development (bar plot) and compared in the heatmap (logarithmic value) with that of NAC60 and NAC33. The data were retrieved from the atlas transcriptomic dataset of cv. ‘Corvina’ ( Fasoli et al ., 2012 ). Each value represents the mean ±SD of three biological replicates. (B) Correlation between NAC61 expression level and sugar content in grape berries sampled from fruit set to maturity in cv. ‘Cabernet Sauvignon’ and cv. ‘Pinot noir’ ( Fasoli et al ., 2018 ). The black line represents the trend of the averaged values of the two varieties. The R 2 values shown correspond to the fitting of different polynomial regressions to each corresponding group of samples (orange for cv. ‘Cabernet Sauvignon’ samples, blue for cv. ‘Pinot noir’ samples, and black for the entire set of samples). (C) Correlation between NAC61 expression level and sugar content in grape berries sampled during post-harvest dehydration in six different varieties ( Zenoni et al ., 2016 ). (D) Correlation between NAC61 expression level and berry weight loss in cv. ‘Corvina’ berries sampled during traditional long and forced short post-harvest dehydration processes ( Zenoni et al ., 2020 ). Expression values were determined by microarray analysis and each value represents the mean ±SD from three biological replicates. (E) NAC61 GCNs based on berry, leaf, and tissue-independent (TI) datasets. Left, Venn diagram showing exclusive and shared genes based on the three datasets; right, three-dimensional plot of co-expressed genes in which NAC, WRKY, and ZIP family members already described as having involvement in berry ripening and/or stress responses are indicated.

    Journal: Journal of Experimental Botany

    Article Title: NAC61 regulates late- and post-ripening osmotic, oxidative, and biotic stress responses in grapevine

    doi: 10.1093/jxb/erad507

    Figure Lengend Snippet: NAC61 expression analysis. (A) NAC61 expression behavior in grapevine organs throughout development (bar plot) and compared in the heatmap (logarithmic value) with that of NAC60 and NAC33. The data were retrieved from the atlas transcriptomic dataset of cv. ‘Corvina’ ( Fasoli et al ., 2012 ). Each value represents the mean ±SD of three biological replicates. (B) Correlation between NAC61 expression level and sugar content in grape berries sampled from fruit set to maturity in cv. ‘Cabernet Sauvignon’ and cv. ‘Pinot noir’ ( Fasoli et al ., 2018 ). The black line represents the trend of the averaged values of the two varieties. The R 2 values shown correspond to the fitting of different polynomial regressions to each corresponding group of samples (orange for cv. ‘Cabernet Sauvignon’ samples, blue for cv. ‘Pinot noir’ samples, and black for the entire set of samples). (C) Correlation between NAC61 expression level and sugar content in grape berries sampled during post-harvest dehydration in six different varieties ( Zenoni et al ., 2016 ). (D) Correlation between NAC61 expression level and berry weight loss in cv. ‘Corvina’ berries sampled during traditional long and forced short post-harvest dehydration processes ( Zenoni et al ., 2020 ). Expression values were determined by microarray analysis and each value represents the mean ±SD from three biological replicates. (E) NAC61 GCNs based on berry, leaf, and tissue-independent (TI) datasets. Left, Venn diagram showing exclusive and shared genes based on the three datasets; right, three-dimensional plot of co-expressed genes in which NAC, WRKY, and ZIP family members already described as having involvement in berry ripening and/or stress responses are indicated.

    Article Snippet: The cDNA synthesis, labelling, hybridization, and washing steps were performed according to the Agilent Microarray-Based Gene Expression Analysis Guide ( https://www.agilent.com/cs/library/usermanuals/Public/G4140-90040_GeneExpression_OneColor_6.9.pdf ).

    Techniques: Expressing, Microarray

    Summary of apoptosis pathways in human and Oncopig cells. Summarized apoptotic pathways altered by gemcitabine treatment in Oncopig BCCL and 5637 cells evaluated by microarray. There were multiple possible cellular pathways involved in apoptosis induction, such as: TP53INP1/P53/BCL/BAX/CASPASE mitochondrial intrinsical pathway; TP53INP1/TP73 activation; FAS/RB1/GADD45B/CASPASE pathway and cell rounding up by RND1 and/or ZMYM6.

    Journal: Frontiers in Oncology

    Article Title: Oncopig bladder cancer cells recapitulate human bladder cancer treatment responses in vitro

    doi: 10.3389/fonc.2024.1323422

    Figure Lengend Snippet: Summary of apoptosis pathways in human and Oncopig cells. Summarized apoptotic pathways altered by gemcitabine treatment in Oncopig BCCL and 5637 cells evaluated by microarray. There were multiple possible cellular pathways involved in apoptosis induction, such as: TP53INP1/P53/BCL/BAX/CASPASE mitochondrial intrinsical pathway; TP53INP1/TP73 activation; FAS/RB1/GADD45B/CASPASE pathway and cell rounding up by RND1 and/or ZMYM6.

    Article Snippet: To obtain the gene transcription panel of treated and untreated human and Oncopig cells, the Two-Color Microarray-Based Gene Expression Analysis microarrays (Agilent Technologies Inc, Santa Clara, CA, USA) were used according to the manufacturer’s instructions.

    Techniques: Microarray, Activation Assay