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Biotechnology Information microarray expression profile datasets
Microarray Expression Profile Datasets, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/microarray+expression+profile+datasets/microarray+data/pmc10331604-32-5-21
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microarray expression profile datasets - by Bioz Stars, 2026-09
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Microarray:

Article Title: Identification and experimental validation of ulcerative colitis-associated hub genes through integrated WGCNA and lysosomal autophagy analysis
Article Snippet: .. The microarray data were sourced from the National Center for Biotechnology Information Gene Expression Omnibus (NCBI-GEO, v5.12; https://www.ncbi.nlm.nih .gov/geo/), a publicly accessible database for gene expression profiling. ..

Article Title: Knockdown of eIF3a alleviates pulmonary arterial hypertension by inhibiting endothelial-to-mesenchymal transition via TGFβ1/SMAD pathway
Article Snippet: .. Microarray data set of IPAH ( GSE113439 ) was downloaded from Gene Expression Omnibus (GEO) database at the National Center for Biotechnology Information (NCBI) ( http://www.ncbi.nlm.nih.gov/geo/ ). ..

Article Title: Identification and experimental validation of ulcerative colitis-associated hub genes through integrated WGCNA and lysosomal autophagy analysis.
Article Snippet: .. The microarray data were sourced from the National Center for Biotechnology Information Gene Expression Omnibus (NCBI-GEO, v5.12; https:// www. ncbi. nlm. nih.gov/geo/), a publicly accessible database for gene expression profiling. ..

Article Title: Critical Immune Checkpoints Linked with NK and T Cells for Overall Survival of Breast Cancer Subtypes
Article Snippet: .. Data Availability Statement: Publicly available microarray datasets is deposited in the National Center for Biotechnology Information GEO database (http://www.ncbi.nlm.nih.gov/geo/, accessed on 27 January 2021). ..

Article Title: Metabolism and response to stress gene signatures reveal ulcerative colitis heterogeneity and identify patients with increased response to therapy
Article Snippet: .. Publicly available microarray gene expression datasets used to predict response to ustekinumab ( GSE206285 ) and anti-TNF therapies ( GSE16879 , GSE23597 , GSE73661 , and GSE92415 ) were obtained from the National Center for Biotechnology Information Gene Expression Omnibus (GEO) data repository. ..

Article Title: Critical Immune Checkpoints Linked with NK and T Cells for Overall Survival of Breast Cancer Subtypes
Article Snippet: .. Data analysis was performed on publicly available microarray datasets that were deposited in the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) (http://www.ncbi.nlm.nih.gov/geo/, accessed on 25 January 2019) database under accession number GSE12777 for breast cancer cell lines (9 basal-like TNBC; 6 mesenchymal TNBC; 7 luminal androgen receptor TNBC; 11 HER2; 12 luminal A; 5 luminal B cell lines). ..

Article Title: Metabolism and response to stress gene signatures reveal ulcerative colitis heterogeneity and identify patients with increased response to therapy
Article Snippet: .. Publicly available microarray gene expression datasets that were used to predict response to ustekinumab ( GSE206285 ) and anti-TNF therapies ( GSE16879 , GSE23597 , GSE73661 , and GSE92415 ) were obtained from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) data repository: https://www.ncbi.nlm.nih.gov/geo/ . .. The andecaliximab (GS-5745) dataset was provided by Gilead Sciences, Inc. by permission, and will be shared on request to the corresponding author with permission of Gilead Sciences, Inc.

Gene Expression:

Article Title: Identification and experimental validation of ulcerative colitis-associated hub genes through integrated WGCNA and lysosomal autophagy analysis
Article Snippet: .. The microarray data were sourced from the National Center for Biotechnology Information Gene Expression Omnibus (NCBI-GEO, v5.12; https://www.ncbi.nlm.nih .gov/geo/), a publicly accessible database for gene expression profiling. ..

Article Title: Knockdown of eIF3a alleviates pulmonary arterial hypertension by inhibiting endothelial-to-mesenchymal transition via TGFβ1/SMAD pathway
Article Snippet: .. Microarray data set of IPAH ( GSE113439 ) was downloaded from Gene Expression Omnibus (GEO) database at the National Center for Biotechnology Information (NCBI) ( http://www.ncbi.nlm.nih.gov/geo/ ). ..

Article Title: Identification and experimental validation of ulcerative colitis-associated hub genes through integrated WGCNA and lysosomal autophagy analysis.
Article Snippet: .. The microarray data were sourced from the National Center for Biotechnology Information Gene Expression Omnibus (NCBI-GEO, v5.12; https:// www. ncbi. nlm. nih.gov/geo/), a publicly accessible database for gene expression profiling. ..

Article Title: Metabolism and response to stress gene signatures reveal ulcerative colitis heterogeneity and identify patients with increased response to therapy
Article Snippet: .. Publicly available microarray gene expression datasets used to predict response to ustekinumab ( GSE206285 ) and anti-TNF therapies ( GSE16879 , GSE23597 , GSE73661 , and GSE92415 ) were obtained from the National Center for Biotechnology Information Gene Expression Omnibus (GEO) data repository. ..

Article Title: Critical Immune Checkpoints Linked with NK and T Cells for Overall Survival of Breast Cancer Subtypes
Article Snippet: .. Data analysis was performed on publicly available microarray datasets that were deposited in the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) (http://www.ncbi.nlm.nih.gov/geo/, accessed on 25 January 2019) database under accession number GSE12777 for breast cancer cell lines (9 basal-like TNBC; 6 mesenchymal TNBC; 7 luminal androgen receptor TNBC; 11 HER2; 12 luminal A; 5 luminal B cell lines). ..

Article Title: Metabolism and response to stress gene signatures reveal ulcerative colitis heterogeneity and identify patients with increased response to therapy
Article Snippet: .. Publicly available microarray gene expression datasets that were used to predict response to ustekinumab ( GSE206285 ) and anti-TNF therapies ( GSE16879 , GSE23597 , GSE73661 , and GSE92415 ) were obtained from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) data repository: https://www.ncbi.nlm.nih.gov/geo/ . .. The andecaliximab (GS-5745) dataset was provided by Gilead Sciences, Inc. by permission, and will be shared on request to the corresponding author with permission of Gilead Sciences, Inc.

other:

Article Title: A mechanism of global gene expression regulation is disrupted by multiple disease states and drug treatments.
Article Snippet: Microarray-based gene expression datasets were downloaded from Gene Expression Omnibus (GEO, hosted by the National Center for Biotechnology Information, NCBI) [43].



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Information of  gene-expression profile datasets  associated with GBM.

Journal: Scientific Reports

Article Title: Discovery of key molecular signatures for diagnosis and therapies of glioblastoma by combining supervised and unsupervised learning approaches

doi: 10.1038/s41598-024-79391-2

Figure Lengend Snippet: Information of gene-expression profile datasets associated with GBM.

Article Snippet: Total 10 microarray gene-expression profile datasets that contained GBM and control samples, were downloaded from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database to explore GBM-causing key genes.

Techniques: Control

Study design flowchart. circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure. DEcircRNAs, differentially expressed circRNAs; DEmiRNAs, differentially expressed miRNAs; DEmRNAs, differentially expressed mRNAs

Journal: BMC Medical Genomics

Article Title: Comprehensive analysis of circRNA-miRNA-mRNA network related to angiogenesis in recurrent implantation failure

doi: 10.1186/s12920-024-01944-1

Figure Lengend Snippet: Study design flowchart. circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure. DEcircRNAs, differentially expressed circRNAs; DEmiRNAs, differentially expressed miRNAs; DEmRNAs, differentially expressed mRNAs

Article Snippet: CircRNA, miRNA and mRNA microarray expression profile datasets were selected from the National Center of Biotechnology Information Gene Expression Omnibus (NCBI) GEO ( https://www.ncbi.nlm.nih.gov/geo/ ).

Techniques:

Boxplots, volcano plots and Venn diagram of mRNAs for GSE103465. (A) Boxplot of GSE103465. (B) Volcano plots of DEmRNAs based on GSE103465. (C) Venn diagram of mRNAs for GeneCards and GSE103465, where the intersection section is predicted DEmRNAs asscociated with angiogenesis in RIF. circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure

Journal: BMC Medical Genomics

Article Title: Comprehensive analysis of circRNA-miRNA-mRNA network related to angiogenesis in recurrent implantation failure

doi: 10.1186/s12920-024-01944-1

Figure Lengend Snippet: Boxplots, volcano plots and Venn diagram of mRNAs for GSE103465. (A) Boxplot of GSE103465. (B) Volcano plots of DEmRNAs based on GSE103465. (C) Venn diagram of mRNAs for GeneCards and GSE103465, where the intersection section is predicted DEmRNAs asscociated with angiogenesis in RIF. circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure

Article Snippet: CircRNA, miRNA and mRNA microarray expression profile datasets were selected from the National Center of Biotechnology Information Gene Expression Omnibus (NCBI) GEO ( https://www.ncbi.nlm.nih.gov/geo/ ).

Techniques:

Boxplots, volcano plots and Venn diagram of miRNAs for GSE121219. (A) Boxplot of GSE121219. (B) Volcano plots of DEmiRNAs based on GSE121219. (C) Venn diagram of miRNAs for miRDIP and GSE121219, where the intersection section is predicted DEmiRNAs asscociated with angiogenesis in RIF. circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure

Journal: BMC Medical Genomics

Article Title: Comprehensive analysis of circRNA-miRNA-mRNA network related to angiogenesis in recurrent implantation failure

doi: 10.1186/s12920-024-01944-1

Figure Lengend Snippet: Boxplots, volcano plots and Venn diagram of miRNAs for GSE121219. (A) Boxplot of GSE121219. (B) Volcano plots of DEmiRNAs based on GSE121219. (C) Venn diagram of miRNAs for miRDIP and GSE121219, where the intersection section is predicted DEmiRNAs asscociated with angiogenesis in RIF. circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure

Article Snippet: CircRNA, miRNA and mRNA microarray expression profile datasets were selected from the National Center of Biotechnology Information Gene Expression Omnibus (NCBI) GEO ( https://www.ncbi.nlm.nih.gov/geo/ ).

Techniques:

Boxplots, volcano plots and Venn diagram of circRNAs for GSE147442. (A) Boxplot of GSE147442 after standardization. (B) Volcano plots of DEcircRNAs based on GSE147442. (C) Venn diagram of miRNAs for starBase 2.0 and GSE147442, where the intersection section is predicted DEcircRNAs asscociated with angiogenesis in RIF. circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure

Journal: BMC Medical Genomics

Article Title: Comprehensive analysis of circRNA-miRNA-mRNA network related to angiogenesis in recurrent implantation failure

doi: 10.1186/s12920-024-01944-1

Figure Lengend Snippet: Boxplots, volcano plots and Venn diagram of circRNAs for GSE147442. (A) Boxplot of GSE147442 after standardization. (B) Volcano plots of DEcircRNAs based on GSE147442. (C) Venn diagram of miRNAs for starBase 2.0 and GSE147442, where the intersection section is predicted DEcircRNAs asscociated with angiogenesis in RIF. circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure

Article Snippet: CircRNA, miRNA and mRNA microarray expression profile datasets were selected from the National Center of Biotechnology Information Gene Expression Omnibus (NCBI) GEO ( https://www.ncbi.nlm.nih.gov/geo/ ).

Techniques:

Figure 5 CircRNA-miRNA-mRNA regulatory network, which consists of 8 DEcircRNAs, 10 DEmiRNAs and 45 DERNAs. DEcircRNA, differentially expressed circular RNA; DEmiRNA, differentially expressed micro RNA; DERNA, differentially expressed RNA. Arrow-shape nodes: circRNAs, triangle nodes: miRNAs, ellipse-shaped nodes: mRNAs

Journal: BMC Medical Genomics

Article Title: Comprehensive analysis of circRNA-miRNA-mRNA network related to angiogenesis in recurrent implantation failure

doi: 10.1186/s12920-024-01944-1

Figure Lengend Snippet: Figure 5 CircRNA-miRNA-mRNA regulatory network, which consists of 8 DEcircRNAs, 10 DEmiRNAs and 45 DERNAs. DEcircRNA, differentially expressed circular RNA; DEmiRNA, differentially expressed micro RNA; DERNA, differentially expressed RNA. Arrow-shape nodes: circRNAs, triangle nodes: miRNAs, ellipse-shaped nodes: mRNAs

Article Snippet: CircRNA, miRNA and mRNA microarray expression profile datasets were selected from the National Center of Biotechnology Information Gene Expression Omnibus (NCBI) GEO ( https://www.ncbi.nlm.nih.gov/geo/ ).

Techniques:

A PPI network and circRNA–miRNA–hub gene regulatory subnetwork. (A) A PPI network of the fifty-five target genes associated with angiogenesis in RIF. (B) Six hub genes extracted by cytoHubba plug-in. (C) CircRNA–miRNA–hub gene regulatory subnetwork, consisting of 3 circRNAs, 3 miRNAs, and 3 mRNAs. PPI, protein–protein interaction; circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure

Journal: BMC Medical Genomics

Article Title: Comprehensive analysis of circRNA-miRNA-mRNA network related to angiogenesis in recurrent implantation failure

doi: 10.1186/s12920-024-01944-1

Figure Lengend Snippet: A PPI network and circRNA–miRNA–hub gene regulatory subnetwork. (A) A PPI network of the fifty-five target genes associated with angiogenesis in RIF. (B) Six hub genes extracted by cytoHubba plug-in. (C) CircRNA–miRNA–hub gene regulatory subnetwork, consisting of 3 circRNAs, 3 miRNAs, and 3 mRNAs. PPI, protein–protein interaction; circRNA, circular RNA; miRNA, microRNA; RIF, recurrent implantation failure

Article Snippet: CircRNA, miRNA and mRNA microarray expression profile datasets were selected from the National Center of Biotechnology Information Gene Expression Omnibus (NCBI) GEO ( https://www.ncbi.nlm.nih.gov/geo/ ).

Techniques: