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Schmid GmbH microarray experiments
Microarray Experiments, supplied by Schmid GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/microarray+experiment/microarray+experiments/pm39658755-169-17-19
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microarray experiments - by Bioz Stars, 2026-10
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Microarray:

Article Title: Prevalence of transcription promoters within archaeal operons and coding sequences
Article Snippet: For each of the predicted operons obtained from Price et al (2005 ), three different statistics were computed in a pairwise manner over all genes in that operon: (1) the log 10 ( P -value) for the two-sample Student's t -test of the mean levels of the probes complementary to each pair of genes; (2) the Spearman rank correlation of the gene-expression profiles across 719 microarray experiments covering several diverse environmental perturbations (oxygen ( Schmid et al , 2007 ), transition metals—Mn, Fe, Co, Ni, Cu, and Zn ( Kaur et al , 2006 ), UV ( Baliga et al , 2004 ) and gamma ( Whitehead et al , 2006 ) radiation, interaction with Dunaliella salina , growth curve in CM media and in defined media, light–dark cycle, and oxidative stress—H 2 O 2 and paraquat (unpublished; see http://gaggle.systemsbiology.net/projects/halo/2007-04 ), and (3) the Spearman rank correlation of the genes' tiling array probes over the growth curve.

Article Title: The importin α proteins IMPA1, IMPA2, and IMPA4 play redundant roles in suppressing autoimmunity in Arabidopsis thaliana.
Article Snippet: Airi Mori, Shitomi Nakagawa, Toshiyuki Suzuki, Takamasa Suzuki, Val erie Gaudin, Takakazu Matsuura, Yoko Ikeda and Kentaro Tamura Department of Environmental and Life Sciences, School of Food and Nutritional Sciences, University of Shizuoka, Shizuoka 422-8526, Japan, Department of Biological Chemistry, College of Bioscience and Biotechnology, Chubu University, 1200 Matsumoto-cho, Kasugai, Aichi 487-8501, Japan, Universit e Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Versailles 78000, France, and Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, Okayama 710-0046, Japan

Article Title: The Relation of Codon Bias to Tissue-Specific Gene Expression in Arabidopsis thaliana
Article Snippet: Microarray experiments were assigned to tissues on the basis of the attached experimental description ( Schmid et al. 2005 ).

Article Title: Association of DRG1 and DRG2 with Ribosomes from Pea,Arabidopsis, and Yeast
Article Snippet: Microarray experiments also demonstrated that AtDRG1 and AtDRG2 expression is quite uniform under essentially all conditions tested and that AtDRG3 is strongly stimulated by heat stress and stimulated ;10-fold by several other stresses and in pollen and developing seeds (Schmid et al. 2005).

Article Title: MHF1 plays Fanconi anaemia complementation group M protein (FANCM)-dependent and FANCM-independent roles in DNA repair and homologous recombination in plants.
Article Snippet: According to AtGenExpress microarray experiments, the transcript level of AtMHF1 is only elevated in stamens of flowers stage 12 and 15 and in mature pollen compared to control values (Schmid et al., 2005).

Control:

Article Title: Prevalence of transcription promoters within archaeal operons and coding sequences
Article Snippet: For each of the predicted operons obtained from Price et al (2005 ), three different statistics were computed in a pairwise manner over all genes in that operon: (1) the log 10 ( P -value) for the two-sample Student's t -test of the mean levels of the probes complementary to each pair of genes; (2) the Spearman rank correlation of the gene-expression profiles across 719 microarray experiments covering several diverse environmental perturbations (oxygen ( Schmid et al , 2007 ), transition metals—Mn, Fe, Co, Ni, Cu, and Zn ( Kaur et al , 2006 ), UV ( Baliga et al , 2004 ) and gamma ( Whitehead et al , 2006 ) radiation, interaction with Dunaliella salina , growth curve in CM media and in defined media, light–dark cycle, and oxidative stress—H 2 O 2 and paraquat (unpublished; see http://gaggle.systemsbiology.net/projects/halo/2007-04 ), and (3) the Spearman rank correlation of the genes' tiling array probes over the growth curve.

Article Title: The importin α proteins IMPA1, IMPA2, and IMPA4 play redundant roles in suppressing autoimmunity in Arabidopsis thaliana.
Article Snippet: Airi Mori, Shitomi Nakagawa, Toshiyuki Suzuki, Takamasa Suzuki, Val erie Gaudin, Takakazu Matsuura, Yoko Ikeda and Kentaro Tamura Department of Environmental and Life Sciences, School of Food and Nutritional Sciences, University of Shizuoka, Shizuoka 422-8526, Japan, Department of Biological Chemistry, College of Bioscience and Biotechnology, Chubu University, 1200 Matsumoto-cho, Kasugai, Aichi 487-8501, Japan, Universit e Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Versailles 78000, France, and Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, Okayama 710-0046, Japan

Article Title: The Relation of Codon Bias to Tissue-Specific Gene Expression in Arabidopsis thaliana
Article Snippet: Microarray experiments were assigned to tissues on the basis of the attached experimental description ( Schmid et al. 2005 ).

Article Title: Association of DRG1 and DRG2 with Ribosomes from Pea,Arabidopsis, and Yeast
Article Snippet: Microarray experiments also demonstrated that AtDRG1 and AtDRG2 expression is quite uniform under essentially all conditions tested and that AtDRG3 is strongly stimulated by heat stress and stimulated ;10-fold by several other stresses and in pollen and developing seeds (Schmid et al. 2005).

Article Title: MHF1 plays Fanconi anaemia complementation group M protein (FANCM)-dependent and FANCM-independent roles in DNA repair and homologous recombination in plants.
Article Snippet: According to AtGenExpress microarray experiments, the transcript level of AtMHF1 is only elevated in stamens of flowers stage 12 and 15 and in mature pollen compared to control values (Schmid et al., 2005).



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A) The stacked bar chart represents a summary of total upregulated (red) and downregulated (green) genes representing 22 important signaling and disease pathways in AD subjects compared to controls. The output core analysis, reflecting the differential gene expressions obtained from the microarrays (gene sets with≥2-fold change, t -test, p < 0.05). B) Ingenuity Pathway Analysis (IPA)-derived Amyloid Processing network of differentially expressed genes derived from microarray analysis. IPA analysis identified a group of genes expression status and their potential interactive links in the context of Amyloid Processing, Neuronal Death. We noted activation of Gamma Secretase, Beta Secretase, upregulation of ERK1/2 CK1/2 P38MAPK, PKA, PRKCE, CDK5 , and CDK5R1 and downregulation of MAPT , and GSK3B .

Journal: Journal of Alzheimer's Disease Reports

Article Title: Transcriptomic Analysis of Alzheimer’s Disease Pathways in a Pakistani Population 1

doi: 10.3233/ADR-230146

Figure Lengend Snippet: A) The stacked bar chart represents a summary of total upregulated (red) and downregulated (green) genes representing 22 important signaling and disease pathways in AD subjects compared to controls. The output core analysis, reflecting the differential gene expressions obtained from the microarrays (gene sets with≥2-fold change, t -test, p < 0.05). B) Ingenuity Pathway Analysis (IPA)-derived Amyloid Processing network of differentially expressed genes derived from microarray analysis. IPA analysis identified a group of genes expression status and their potential interactive links in the context of Amyloid Processing, Neuronal Death. We noted activation of Gamma Secretase, Beta Secretase, upregulation of ERK1/2 CK1/2 P38MAPK, PKA, PRKCE, CDK5 , and CDK5R1 and downregulation of MAPT , and GSK3B .

Article Snippet: The oligonucleotide microarray experiments were conducted by EpigenDx (Boston, MA) using the Affymetrix U133 Plus 2.0 Array platform, which has comprehensive coverage of the whole transcribed human genome on a single array.

Techniques: Derivative Assay, Microarray, Expressing, Activation Assay