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mas5 algorithm  (Thermo Fisher)


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    Thermo Fisher mas5 algorithm
    Mas5 Algorithm, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/mas5+algorithm/pmc10948009-454-7-6
    Average 90 stars, based on 1 article reviews
    mas5 algorithm - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    Expressing:

    Article Title: Predictive marker for EGFR inhibitor treatment
    Article Snippet: .. The mas5 algorithm (AFFYMETRIX, GeneChip® Expression: Data Analysis Fundamentals. .. 2004, AFFYMETRIX) was used to make detection calls for the individual probe-sets.

    Article Title: Differential H3K4 Methylation Identifies Developmentally Poised Hematopoietic Genes
    Article Snippet: Total RNA was purified from 2 × 10 7 EML cells using the QIAGEN RNEasy kit (QIAGEN, Chatsworth). .. Expression values were calculated using the Affymetrix MAS5 algorithm. ..

    Article Title: The use of rat lens explant cultures to study the mechanism of drug-induced cataractogenesis.
    Article Snippet: .. Raw data (Supplementary data) was processed into expression levels by the MAS5 algorithm (Affymetrix) using a target intensity of 150. .. Data analysis was performed using Partek Discovery Suite version 6.2 as well as an internal software designed to facilitate gene grouping and signature handling.

    Article Title: 4-phenylbutyric acid attenuates endoplasmic reticulum stress-mediated pancreatic β-cell apoptosis in rats with streptozotocin-induced diabetes.
    Article Snippet: Endoplasmic reticulum stress (ERS) plays an important role in diabetes mellitus (DM), but the association between DM and ERS is unknown.. We have previously shown that streptozotocin (STZ)-induced diabetes in rats is characterized by increased levels of ERS markers.. Here, we tested whether the chemical chaperone 4-phenylbutyric acid (4-PBA) ameliorated ERS-associated apoptosis in pancreatic b-cells in rats with STZ-induced diabetes.

    other:

    Article Title: Microarray-mediated diagnosis of herpes virus infection by monitoring host's differential gene expression upon infection
    Article Snippet: Three illustrative approaches to normalizing data might be used: Affymetrix MAS 5 Algorithm.

    Article Title: Polynucleotide marker genes and their expression, for diagnosis of endotoxemia
    Article Snippet: Two illustrative approaches to normalising data may be used: Affymetrix MAS 5 Algorithm.

    Software:

    Article Title: 4-phenylbutyric acid attenuates endoplasmic reticulum stress-mediated pancreatic β-cell apoptosis in rats with streptozotocin-induced diabetes.
    Article Snippet: Endoplasmic reticulum stress (ERS) plays an important role in diabetes mellitus (DM), but the association between DM and ERS is unknown.. We have previously shown that streptozotocin (STZ)-induced diabetes in rats is characterized by increased levels of ERS markers.. Here, we tested whether the chemical chaperone 4-phenylbutyric acid (4-PBA) ameliorated ERS-associated apoptosis in pancreatic b-cells in rats with STZ-induced diabetes.



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    Image Search Results


    Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the MAS5 algorithm.

    Journal: BMC Genomics

    Article Title: Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues

    doi: 10.1186/1471-2164-10-324

    Figure Lengend Snippet: Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the MAS5 algorithm.

    Article Snippet: Secondly, analysis was performed on the Breast Cancer DSA with the Affymetrix Microarray Suite version 5 (MAS5) algorithms, which uses the probe-pair data to calculate the detection call.

    Techniques: Expressing, Microarray