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in-house python script based on the rdkit and openeye libraries  (OpenEye Scientific Software Inc)

 
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    Structured Review

    OpenEye Scientific Software Inc in-house python script based on the rdkit and openeye libraries
    In House Python Script Based On The Rdkit And Openeye Libraries, supplied by OpenEye Scientific Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/in-house+python+script/rdkit/pmc08837092-141-18-20
    Average 90 stars, based on 1 article reviews
    in-house python script based on the rdkit and openeye libraries - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    other:

    Article Title: Evaluating the Functional Importance of Conformer‐Dependent Atomic Partial Charge Assignment
    Article Snippet: Here, using this approach (OpenEye AM1‐BCC ELF10), we generated input conformers using RDKit v2024.03.2.

    Article Title: DOCK 6: Incorporating hierarchical traversal through precomputed ligand conformations to enable large-scale docking.
    Article Snippet: OpenEye was replaced with RdKit to calculate the formal charge of the SMILES string.

    Article Title: Promiscuous Ligands from Experimentally Determined Structures, Binding Conformations, and Protein Family-Dependent Interaction Hotspots
    Article Snippet: All calculations were carried out using in-house Python scripts with the aid of RDKit and the OpenEye’s chemistry toolkit, KNIME protocols, and the molecular operating environment (MOE).

    Article Title: DataPype: A Fully Automated Unified Software Platform for Computer-Aided Drug Design
    Article Snippet: For the seven DUD-E data sets examined in this study, using the RDKit or OpenBabel equivalent of the OpenEye calculation did not result in improved docking metrics.

    Article Title: Evaluating the Functional Importance of Conformer-Dependent Atomic Partial Charge Assignment.
    Article Snippet: Here, using this approach (OpenEye AM1- BCC ELF10), we generated input conformers using RDKit v2024.03.2.

    Article Title: Identification of Corosolic and Oleanolic Acids as Molecules Antagonizing the Human RORγT Nuclear Receptor Using the Calculated Fingerprints of the Molecular Similarity
    Article Snippet: The resulting SMILES representation was later turned into 3D structures with an in-house Python script based on the RDKit and OpenEye libraries [ , , ].

    Filtration:

    Article Title: A Comprehensive Computational Insight into the PD-L1 Binding to PD-1 and Small Molecules
    Article Snippet: .. Almost 200,000 compounds of the Specs database were pre-processed by PAINS filtration using the comprehensive application of the Molinspration Cheminformatics software, OpenEye, ChemAxon, RDkit, and CERTARA. ..

    Software:

    Article Title: A Comprehensive Computational Insight into the PD-L1 Binding to PD-1 and Small Molecules
    Article Snippet: .. Almost 200,000 compounds of the Specs database were pre-processed by PAINS filtration using the comprehensive application of the Molinspration Cheminformatics software, OpenEye, ChemAxon, RDkit, and CERTARA. ..



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