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ggplot2: create elegant data visualisations using the grammar of graphics.  (RStudio)

 
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    RStudio ggplot2: create elegant data visualisations using the grammar of graphics.
    Ggplot2: Create Elegant Data Visualisations Using The Grammar Of Graphics., supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/graphical+visualisations/ggplot2/pm39833728-274-2-4
    Average 90 stars, based on 1 article reviews
    ggplot2: create elegant data visualisations using the grammar of graphics. - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    other:

    Article Title: Preservative Effects of Gracilaria sp. Extract in Maintaining the Quality and Shelf Life of Refrigerated Pangas ( Pangasius hypophthalmus ) Fillets
    Article Snippet: The multivariate analysis and Pearson's correlation were conducted using a ggplot2‐based R (R version 4.3.0, RStudio 2023.03.1 + 446) package named factoextra ( http://www.sthda.com/english/rpkgs/factoextra ), and FactoMineR ( http://factominer.free.fr/index.html ).

    Article Title: Utilizing rat kidney gene co-expression networks to enhance safety assessment biomarker identification and human translation
    Article Snippet: ggplot2 R package , Wickham , https://cran.rstudio.com/.

    Generated:

    Article Title: Antisense oligonucleotide allele-specific targeting of EFEMP1 in a patient-derived model of Doyne honeycomb retinal dystrophy
    Article Snippet: One way ANOVAs were carried out using the base R aov function and post-hoc analyses using the RStudio package rstatix (v0.7.2). .. All graphs presented were generated using the RStudio package using the RStudio package ggplot2 (v3.4.1). ..

    Article Title: Influence of mowing timing on the breeding success of an endangered ground-nesting migratory bird, Whinchat ( Saxicola rubetra )
    Article Snippet: .. Plots were generated using the ggplot2 package ( ) in R. All statistical analyses were conducted using RStudio ( ) and were performed at a significance level of α =248 0.05. ..

    Article Title: Measles RNA detection in wastewater solids
    Article Snippet: We aligned the primer and probe sequences of the Roy et al. assay to 97 measles sequences downloaded from National Center for Biotechnology Information (NCBI) in March 2025 (43 genotype B3 and 54 genotype D8) and to the Edmonstron-Enders and Edmonston-Zagreb vaccine sequences from NCBI Virus using the cloud-based platform Benchling. .. Simple majority, 75% majority, and 90% majority consensus sequences for both the B3 and D8 genotype were generated in R. We used in silico modeling with RStudio Bioconductor (V3.21) and Benchling software to identify modifications in the probe and reverse primer sequences that would make the assay specific to circulating WT measles genotypes B3 and D8 rather than the vaccine sequences. ..

    Article Title: Correlated protein-RNA associations reveal a requirement for HNRNPU in long-range Polycomb recruitment by the lncRNAs Airn , Kcnq1ot1 , and Xist
    Article Snippet: .. All plots were generated using ggplot2 ( ) in RStudio. ..

    In Silico:

    Article Title: Measles RNA detection in wastewater solids
    Article Snippet: We aligned the primer and probe sequences of the Roy et al. assay to 97 measles sequences downloaded from National Center for Biotechnology Information (NCBI) in March 2025 (43 genotype B3 and 54 genotype D8) and to the Edmonstron-Enders and Edmonston-Zagreb vaccine sequences from NCBI Virus using the cloud-based platform Benchling. .. Simple majority, 75% majority, and 90% majority consensus sequences for both the B3 and D8 genotype were generated in R. We used in silico modeling with RStudio Bioconductor (V3.21) and Benchling software to identify modifications in the probe and reverse primer sequences that would make the assay specific to circulating WT measles genotypes B3 and D8 rather than the vaccine sequences. ..

    RNA Sequencing:

    Article Title: Iron-catalyzed oxidative stress compromises cancer promotional effect of BRCA2 haploinsufficiency through mitochondria-targeted ferroptosis
    Article Snippet: Gene set enrichment analysis (GSEA) was performed with GSEA v4.3.2, with the Rat_Ensembl_Gene_ID_Human_Orthologs_MSigDB.v2023.Hs.chip and gene set databases, WikiPathways. .. Visualization was performed using R Studio with ggplot2 [ , ] The original RNA-seq data can be accessed from the DRA (DDBJ Sequence Read Archive) database under the accession code DRR689908-689925, with BioProject Accession PRJDB20254. .. Formaldehyde concentration in the kidneys was measured by DFOR-100 formaldehyde kit (BioAssay Systems, Hayward, CA) according to the manufacturer's instructions.

    Sequencing:

    Article Title: Iron-catalyzed oxidative stress compromises cancer promotional effect of BRCA2 haploinsufficiency through mitochondria-targeted ferroptosis
    Article Snippet: Gene set enrichment analysis (GSEA) was performed with GSEA v4.3.2, with the Rat_Ensembl_Gene_ID_Human_Orthologs_MSigDB.v2023.Hs.chip and gene set databases, WikiPathways. .. Visualization was performed using R Studio with ggplot2 [ , ] The original RNA-seq data can be accessed from the DRA (DDBJ Sequence Read Archive) database under the accession code DRR689908-689925, with BioProject Accession PRJDB20254. .. Formaldehyde concentration in the kidneys was measured by DFOR-100 formaldehyde kit (BioAssay Systems, Hayward, CA) according to the manufacturer's instructions.



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    Active site of K69A T. brucei ODC in complex with DFMO. The figure was drawn based on the data of reference 7 using the RasMol 2.6 Molecular Graphics Visualisation tool (Glaxo Wellcome Research & Development Co., Stevenage, Herts., United Kingdom). In reference 7, the N terminus of recombinant T. brucei ODC corresponds to the 21st residue of intact ODC (Fig. ​(Fig.3).3). Residues (V62, T63, P64, D72, and T359) which correspond to the residues mutated in this study and were identified as functionally important for substrate specificity in S. ruminantium LDC are purple and violet. The atoms of PLP are yellow, the atoms of DFMO are green, A69 and C360 are orange, and Y389 and F397, which cradle the aliphatic portion of DFMO, are brown. R277, D332, and D361 are also shown, and nitrogen and oxygen atoms of these residues are blue and red, respectively. The asterisked residues belong to the other subunit of the dimer.
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    Active site of K69A T. brucei ODC in complex with DFMO. The figure was drawn based on the data of reference 7 using the RasMol 2.6 Molecular Graphics Visualisation tool (Glaxo Wellcome Research & Development Co., Stevenage, Herts., United Kingdom). In reference 7, the N terminus of recombinant T. brucei ODC corresponds to the 21st residue of intact ODC (Fig. ​(Fig.3).3). Residues (V62, T63, P64, D72, and T359) which correspond to the residues mutated in this study and were identified as functionally important for substrate specificity in S. ruminantium LDC are purple and violet. The atoms of PLP are yellow, the atoms of DFMO are green, A69 and C360 are orange, and Y389 and F397, which cradle the aliphatic portion of DFMO, are brown. R277, D332, and D361 are also shown, and nitrogen and oxygen atoms of these residues are blue and red, respectively. The asterisked residues belong to the other subunit of the dimer.

    Journal:

    Article Title: Gene Cloning and Molecular Characterization of Lysine Decarboxylase from Selenomonas ruminantium Delineate Its Evolutionary Relationship to Ornithine Decarboxylases from Eukaryotes

    doi:

    Figure Lengend Snippet: Active site of K69A T. brucei ODC in complex with DFMO. The figure was drawn based on the data of reference 7 using the RasMol 2.6 Molecular Graphics Visualisation tool (Glaxo Wellcome Research & Development Co., Stevenage, Herts., United Kingdom). In reference 7, the N terminus of recombinant T. brucei ODC corresponds to the 21st residue of intact ODC (Fig. ​(Fig.3).3). Residues (V62, T63, P64, D72, and T359) which correspond to the residues mutated in this study and were identified as functionally important for substrate specificity in S. ruminantium LDC are purple and violet. The atoms of PLP are yellow, the atoms of DFMO are green, A69 and C360 are orange, and Y389 and F397, which cradle the aliphatic portion of DFMO, are brown. R277, D332, and D361 are also shown, and nitrogen and oxygen atoms of these residues are blue and red, respectively. The asterisked residues belong to the other subunit of the dimer.

    Article Snippet: The figure was drawn based on the data of reference 7 using the RasMol 2.6 Molecular Graphics Visualisation tool (Glaxo Wellcome Research & Development Co., Stevenage, Herts., United Kingdom).

    Techniques: Recombinant