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clariom-s microarray human genome rna expression analysis  (Thermo Fisher)


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    Structured Review

    Thermo Fisher clariom-s microarray human genome rna expression analysis
    Clariom S Microarray Human Genome Rna Expression Analysis, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/expression+microarray+analysis/pmc11390110-216-13-13
    Average 90 stars, based on 1 article reviews
    clariom-s microarray human genome rna expression analysis - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Purification:

    Article Title: Physiologic and structural characterization of desisobutyryl-ciclesonide, a selective glucocorticoid receptor modulator in newborn rats
    Article Snippet: Confirmation of cRNA diversity was performed by using a Nanodrop to generate an electrophoretogram for each in vitro transcription reaction regarding sample yield, integrity and size diversity against a reference RNA. .. Fifteen micrograms of purified, amplified, biotin-labeled cRNA was fragmented and hybridized to an Affymetrix Clariom S chip, washed in a Fluidics Station 450, and scanned using a Scanner 3000 immediately after hybridization according to manufacturer's instructions (ThermoFisher Scientific 00-00079, 00-0210). ..

    Article Title: Physiologic and structural characterization of desisobutyryl-ciclesonide, a selective glucocorticoid receptor modulator in newborn rats
    Article Snippet: Confirmation of cRNA diversity was performed by using a Nanodrop to generate an electrophoretogram for each in vitro transcription reaction regarding sample yield, integrity and size diversity against a reference RNA. .. Fifteen micrograms of purified, amplified, biotin-labeled cRNA was fragmented and hybridized to an Affymetrix Clariom S chip, washed in a Fluidics Station 450, and scanned using a Scanner 3000 immediately after hybridization according to manufacturer’s instructions (ThermoFisher Scientific 00-00079, 00-0210). ..

    Amplification:

    Article Title: Physiologic and structural characterization of desisobutyryl-ciclesonide, a selective glucocorticoid receptor modulator in newborn rats
    Article Snippet: Confirmation of cRNA diversity was performed by using a Nanodrop to generate an electrophoretogram for each in vitro transcription reaction regarding sample yield, integrity and size diversity against a reference RNA. .. Fifteen micrograms of purified, amplified, biotin-labeled cRNA was fragmented and hybridized to an Affymetrix Clariom S chip, washed in a Fluidics Station 450, and scanned using a Scanner 3000 immediately after hybridization according to manufacturer's instructions (ThermoFisher Scientific 00-00079, 00-0210). ..

    Article Title: Physiologic and structural characterization of desisobutyryl-ciclesonide, a selective glucocorticoid receptor modulator in newborn rats
    Article Snippet: Confirmation of cRNA diversity was performed by using a Nanodrop to generate an electrophoretogram for each in vitro transcription reaction regarding sample yield, integrity and size diversity against a reference RNA. .. Fifteen micrograms of purified, amplified, biotin-labeled cRNA was fragmented and hybridized to an Affymetrix Clariom S chip, washed in a Fluidics Station 450, and scanned using a Scanner 3000 immediately after hybridization according to manufacturer’s instructions (ThermoFisher Scientific 00-00079, 00-0210). ..

    Hybridization:

    Article Title: Physiologic and structural characterization of desisobutyryl-ciclesonide, a selective glucocorticoid receptor modulator in newborn rats
    Article Snippet: Confirmation of cRNA diversity was performed by using a Nanodrop to generate an electrophoretogram for each in vitro transcription reaction regarding sample yield, integrity and size diversity against a reference RNA. .. Fifteen micrograms of purified, amplified, biotin-labeled cRNA was fragmented and hybridized to an Affymetrix Clariom S chip, washed in a Fluidics Station 450, and scanned using a Scanner 3000 immediately after hybridization according to manufacturer's instructions (ThermoFisher Scientific 00-00079, 00-0210). ..

    Article Title: Physiologic and structural characterization of desisobutyryl-ciclesonide, a selective glucocorticoid receptor modulator in newborn rats
    Article Snippet: Confirmation of cRNA diversity was performed by using a Nanodrop to generate an electrophoretogram for each in vitro transcription reaction regarding sample yield, integrity and size diversity against a reference RNA. .. Fifteen micrograms of purified, amplified, biotin-labeled cRNA was fragmented and hybridized to an Affymetrix Clariom S chip, washed in a Fluidics Station 450, and scanned using a Scanner 3000 immediately after hybridization according to manufacturer’s instructions (ThermoFisher Scientific 00-00079, 00-0210). ..

    Microarray:

    Article Title: The lncRNA SNHG26 drives the inflammatory-to-proliferative state transition of keratinocyte progenitor cells during wound healing
    Article Snippet: The total RNA was extracted by using miRNeasy mini Kits (Qiagen) following the manufacturer’s instructions. .. The transcriptome profiling was performed by using Affymetrix Clariom S microarray in Bioinformatics and Expression Analysis (BEA) core facility at the Karolinska Institute. .. The raw.cel files were imported to Transcriptome Analysis Console (TAC, Thermo Fisher) for visualization.

    Article Title: Cannabinoid combination targets NOTCH1 -mutated T-cell acute lymphoblastic leukemia through the integrated stress response pathway
    Article Snippet: Sample quality was assessed by both spectrophotometrically (NanoDrop Technologies) and gel electrophoresis with 1% agarose. .. RNA sequencing of differentially expressed genes was performed on extracted RNA with an Affymetrix Clariom-S microarray for human genome RNA expression analysis and an Affymetrix Transcriptome Analysis Console software. ..

    Article Title: Early transcriptional changes in neutrophil-mediated processes following recanalization after ischemic stroke
    Article Snippet: Samples with an RNA integrity number (RIN) of less than 7, A260/A280 ratio of less than 1.8, and volume of less than 35uL each at 50ng/uL were excluded from the dataset (Thermo Fisher Scientific, U.S.). .. Reads was measured by Affymetrix Clariom S microarray (Affymetrix, Thermo Fisher Scientific). ..

    Expressing:

    Article Title: The lncRNA SNHG26 drives the inflammatory-to-proliferative state transition of keratinocyte progenitor cells during wound healing
    Article Snippet: The total RNA was extracted by using miRNeasy mini Kits (Qiagen) following the manufacturer’s instructions. .. The transcriptome profiling was performed by using Affymetrix Clariom S microarray in Bioinformatics and Expression Analysis (BEA) core facility at the Karolinska Institute. .. The raw.cel files were imported to Transcriptome Analysis Console (TAC, Thermo Fisher) for visualization.

    other:

    Article Title: Cannabinoid combination targets NOTCH1-mutated T-cell acute lymphoblastic leukemia through the integrated stress response pathway
    Article Snippet: RNA sequencing of differentially expressed genes was performed on extracted RNA with an Affymetrix Clariom- S microarray for human genome RNA expression analysis and an Affymetrix Transcriptome Analysis Console software.

    RNA Sequencing:

    Article Title: Cannabinoid combination targets NOTCH1 -mutated T-cell acute lymphoblastic leukemia through the integrated stress response pathway
    Article Snippet: Sample quality was assessed by both spectrophotometrically (NanoDrop Technologies) and gel electrophoresis with 1% agarose. .. RNA sequencing of differentially expressed genes was performed on extracted RNA with an Affymetrix Clariom-S microarray for human genome RNA expression analysis and an Affymetrix Transcriptome Analysis Console software. ..

    RNA Expression:

    Article Title: Cannabinoid combination targets NOTCH1 -mutated T-cell acute lymphoblastic leukemia through the integrated stress response pathway
    Article Snippet: Sample quality was assessed by both spectrophotometrically (NanoDrop Technologies) and gel electrophoresis with 1% agarose. .. RNA sequencing of differentially expressed genes was performed on extracted RNA with an Affymetrix Clariom-S microarray for human genome RNA expression analysis and an Affymetrix Transcriptome Analysis Console software. ..

    Software:

    Article Title: Cannabinoid combination targets NOTCH1 -mutated T-cell acute lymphoblastic leukemia through the integrated stress response pathway
    Article Snippet: Sample quality was assessed by both spectrophotometrically (NanoDrop Technologies) and gel electrophoresis with 1% agarose. .. RNA sequencing of differentially expressed genes was performed on extracted RNA with an Affymetrix Clariom-S microarray for human genome RNA expression analysis and an Affymetrix Transcriptome Analysis Console software. ..



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    NAC61 expression analysis. (A) NAC61 expression behavior in grapevine organs throughout development (bar plot) and compared in the heatmap (logarithmic value) with that of NAC60 and NAC33. The data were retrieved from the atlas transcriptomic dataset of cv. ‘Corvina’ ( Fasoli et al ., 2012 ). Each value represents the mean ±SD of three biological replicates. (B) Correlation between NAC61 expression level and sugar content in grape berries sampled from fruit set to maturity in cv. ‘Cabernet Sauvignon’ and cv. ‘Pinot noir’ ( Fasoli et al ., 2018 ). The black line represents the trend of the averaged values of the two varieties. The R 2 values shown correspond to the fitting of different polynomial regressions to each corresponding group of samples (orange for cv. ‘Cabernet Sauvignon’ samples, blue for cv. ‘Pinot noir’ samples, and black for the entire set of samples). (C) Correlation between NAC61 expression level and sugar content in grape berries sampled during post-harvest dehydration in six different varieties ( Zenoni et al ., 2016 ). (D) Correlation between NAC61 expression level and berry weight loss in cv. ‘Corvina’ berries sampled during traditional long and forced short post-harvest dehydration processes ( Zenoni et al ., 2020 ). Expression values were determined by <t>microarray</t> analysis and each value represents the mean ±SD from three biological replicates. (E) NAC61 GCNs based on berry, leaf, and tissue-independent (TI) datasets. Left, Venn diagram showing exclusive and shared genes based on the three datasets; right, three-dimensional plot of co-expressed genes in which NAC, WRKY, and ZIP family members already described as having involvement in berry ripening and/or stress responses are indicated.
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    Image Search Results


    NAC61 expression analysis. (A) NAC61 expression behavior in grapevine organs throughout development (bar plot) and compared in the heatmap (logarithmic value) with that of NAC60 and NAC33. The data were retrieved from the atlas transcriptomic dataset of cv. ‘Corvina’ ( Fasoli et al ., 2012 ). Each value represents the mean ±SD of three biological replicates. (B) Correlation between NAC61 expression level and sugar content in grape berries sampled from fruit set to maturity in cv. ‘Cabernet Sauvignon’ and cv. ‘Pinot noir’ ( Fasoli et al ., 2018 ). The black line represents the trend of the averaged values of the two varieties. The R 2 values shown correspond to the fitting of different polynomial regressions to each corresponding group of samples (orange for cv. ‘Cabernet Sauvignon’ samples, blue for cv. ‘Pinot noir’ samples, and black for the entire set of samples). (C) Correlation between NAC61 expression level and sugar content in grape berries sampled during post-harvest dehydration in six different varieties ( Zenoni et al ., 2016 ). (D) Correlation between NAC61 expression level and berry weight loss in cv. ‘Corvina’ berries sampled during traditional long and forced short post-harvest dehydration processes ( Zenoni et al ., 2020 ). Expression values were determined by microarray analysis and each value represents the mean ±SD from three biological replicates. (E) NAC61 GCNs based on berry, leaf, and tissue-independent (TI) datasets. Left, Venn diagram showing exclusive and shared genes based on the three datasets; right, three-dimensional plot of co-expressed genes in which NAC, WRKY, and ZIP family members already described as having involvement in berry ripening and/or stress responses are indicated.

    Journal: Journal of Experimental Botany

    Article Title: NAC61 regulates late- and post-ripening osmotic, oxidative, and biotic stress responses in grapevine

    doi: 10.1093/jxb/erad507

    Figure Lengend Snippet: NAC61 expression analysis. (A) NAC61 expression behavior in grapevine organs throughout development (bar plot) and compared in the heatmap (logarithmic value) with that of NAC60 and NAC33. The data were retrieved from the atlas transcriptomic dataset of cv. ‘Corvina’ ( Fasoli et al ., 2012 ). Each value represents the mean ±SD of three biological replicates. (B) Correlation between NAC61 expression level and sugar content in grape berries sampled from fruit set to maturity in cv. ‘Cabernet Sauvignon’ and cv. ‘Pinot noir’ ( Fasoli et al ., 2018 ). The black line represents the trend of the averaged values of the two varieties. The R 2 values shown correspond to the fitting of different polynomial regressions to each corresponding group of samples (orange for cv. ‘Cabernet Sauvignon’ samples, blue for cv. ‘Pinot noir’ samples, and black for the entire set of samples). (C) Correlation between NAC61 expression level and sugar content in grape berries sampled during post-harvest dehydration in six different varieties ( Zenoni et al ., 2016 ). (D) Correlation between NAC61 expression level and berry weight loss in cv. ‘Corvina’ berries sampled during traditional long and forced short post-harvest dehydration processes ( Zenoni et al ., 2020 ). Expression values were determined by microarray analysis and each value represents the mean ±SD from three biological replicates. (E) NAC61 GCNs based on berry, leaf, and tissue-independent (TI) datasets. Left, Venn diagram showing exclusive and shared genes based on the three datasets; right, three-dimensional plot of co-expressed genes in which NAC, WRKY, and ZIP family members already described as having involvement in berry ripening and/or stress responses are indicated.

    Article Snippet: The cDNA synthesis, labelling, hybridization, and washing steps were performed according to the Agilent Microarray-Based Gene Expression Analysis Guide ( https://www.agilent.com/cs/library/usermanuals/Public/G4140-90040_GeneExpression_OneColor_6.9.pdf ).

    Techniques: Expressing, Microarray