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Microarrays Inc microarray codelink human whole genome
Microarray Codelink Human Whole Genome, supplied by Microarrays Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/expression+microarray+analysis/codelink+expression+analysis+software+5+0/pm18591936-182-20-29
Average 90 stars, based on 1 article reviews
microarray codelink human whole genome - by Bioz Stars, 2026-10
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Article Title: Defining Molecular Signature of Pro-Immunogenic Radiotherapy Targets in Human Prostate Cancer Cells
Article Snippet: The microarray analysis was done using CodeLinke Whole Genome Bioarrays representing 55,000 probes (Applied Microarrays Inc., Tempe, AZ).

Article Title: Defining Molecular Signature of Pro-Immunogenic Radiotherapy Targets in Human Prostate Cancer Cells
Article Snippet: CodeLink Expression Analysis software 5.0 (Applied Microarrays Inc.) was used to process the scanned images from arrays (gridding and feature intensity) and the data generated for each feature on the array were analyzed with GeneSpring ® software (Agilent Technologies).

Article Title: Defining Molecular Signature of Pro-Immunogenic Radiotherapy Targets in Human Prostate Cancer Cells
Article Snippet: CodeLink Expression Analysis software 5.0 (Applied Microarrays Inc.) was used to process the scanned images from arrays (gridding and feature intensity) and the data generated for each feature on the array were analyzed with GeneSpringt software (Agilent Technologies).

Hybridization:

Article Title: Initial receptor-ligand interactions modulate gene expression and phagosomal properties during both early and late stages of phagocytosis.
Article Snippet: The receptors engaged during recognition and phagocytic uptake of microorganisms and particles influence signaling events and diverse subcellular responses that occur during phagosome formation and maturation.. However, pathogens generally have multiple ligands on their surface, making it difficult to dissect the roles of individual receptors during phagocytosis.. Moreover, it remains elusive to which extent receptor–ligand interactions and early binding events define the subsequent intracellular fate of phagosomes.

Article Title: NS-398, Ibuprofen and COX-2 RNAi produce significantly different gene expression profiles in prostate cancer cells
Article Snippet: The quantity and quality of the cRNA was assayed by spectrophotometry and on the Agilent Bioanalyzer as indicated for total RNA analysis. .. Ten μg of purified cRNA was fragmented to uniform size and applied to CodeLink Human Whole Genome Bioarrays (Applied microarrays Inc.) in hybridization buffer. ..

Microarray:

Article Title: Defining Molecular Signature of Pro-Immunogenic Radiotherapy Targets in Human Prostate Cancer Cells
Article Snippet: The concentration and purity of total RNA was measured by spectrophotometry at OD260/280 and the quality of the total RNA sample was assessed using an Agilent Bioanalyzer with the RNA6000 Nano Lab Chip (Agilent Technologies Inc., Santa Clara, CA). .. The microarray analysis was done using CodeLink TM Whole Genome Bioarrays representing 55,000 probes (Applied Microarrays Inc., Tempe, AZ). .. CodeLink Expression Analysis software 5.0 (Applied Microarrays Inc.) was used to process the scanned images from arrays (gridding and feature intensity) and the data generated for each feature on the array were analyzed with GeneSpring ® software (Agilent Technologies).

Article Title: DAX1, a direct target of EWS/FLI1 oncoprotein, is a principal regulator of cell-cycle progression in Ewing's tumor cells.
Article Snippet: The number of colonies for field and its area were calculated using the image analysis software analysis (Olympus, Hamburg, Germany). .. Tumor formation assay in nude mice was performed as previously described (Carrillo et al., 2007) CodeLink microarrays for analysis of gene expression profiles Microarray CodeLink Human Whole Genome (Applied Microarrays Inc., Tempe, AZ, USA), containing approximately 55 000 gene probes derived from annotated mRNA sequences and expressed sequence tags, was used to analyse gene expression profiles. ..

Purification:

Article Title: NS-398, Ibuprofen and COX-2 RNAi produce significantly different gene expression profiles in prostate cancer cells
Article Snippet: The quantity and quality of the cRNA was assayed by spectrophotometry and on the Agilent Bioanalyzer as indicated for total RNA analysis. .. Ten μg of purified cRNA was fragmented to uniform size and applied to CodeLink Human Whole Genome Bioarrays (Applied microarrays Inc.) in hybridization buffer. ..

Tube Formation Assay:

Article Title: DAX1, a direct target of EWS/FLI1 oncoprotein, is a principal regulator of cell-cycle progression in Ewing's tumor cells.
Article Snippet: The number of colonies for field and its area were calculated using the image analysis software analysis (Olympus, Hamburg, Germany). .. Tumor formation assay in nude mice was performed as previously described (Carrillo et al., 2007) CodeLink microarrays for analysis of gene expression profiles Microarray CodeLink Human Whole Genome (Applied Microarrays Inc., Tempe, AZ, USA), containing approximately 55 000 gene probes derived from annotated mRNA sequences and expressed sequence tags, was used to analyse gene expression profiles. ..

Gene Expression:

Article Title: DAX1, a direct target of EWS/FLI1 oncoprotein, is a principal regulator of cell-cycle progression in Ewing's tumor cells.
Article Snippet: The number of colonies for field and its area were calculated using the image analysis software analysis (Olympus, Hamburg, Germany). .. Tumor formation assay in nude mice was performed as previously described (Carrillo et al., 2007) CodeLink microarrays for analysis of gene expression profiles Microarray CodeLink Human Whole Genome (Applied Microarrays Inc., Tempe, AZ, USA), containing approximately 55 000 gene probes derived from annotated mRNA sequences and expressed sequence tags, was used to analyse gene expression profiles. ..

Derivative Assay:

Article Title: DAX1, a direct target of EWS/FLI1 oncoprotein, is a principal regulator of cell-cycle progression in Ewing's tumor cells.
Article Snippet: The number of colonies for field and its area were calculated using the image analysis software analysis (Olympus, Hamburg, Germany). .. Tumor formation assay in nude mice was performed as previously described (Carrillo et al., 2007) CodeLink microarrays for analysis of gene expression profiles Microarray CodeLink Human Whole Genome (Applied Microarrays Inc., Tempe, AZ, USA), containing approximately 55 000 gene probes derived from annotated mRNA sequences and expressed sequence tags, was used to analyse gene expression profiles. ..

Sequencing:

Article Title: DAX1, a direct target of EWS/FLI1 oncoprotein, is a principal regulator of cell-cycle progression in Ewing's tumor cells.
Article Snippet: The number of colonies for field and its area were calculated using the image analysis software analysis (Olympus, Hamburg, Germany). .. Tumor formation assay in nude mice was performed as previously described (Carrillo et al., 2007) CodeLink microarrays for analysis of gene expression profiles Microarray CodeLink Human Whole Genome (Applied Microarrays Inc., Tempe, AZ, USA), containing approximately 55 000 gene probes derived from annotated mRNA sequences and expressed sequence tags, was used to analyse gene expression profiles. ..



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NAC61 expression analysis. (A) NAC61 expression behavior in grapevine organs throughout development (bar plot) and compared in the heatmap (logarithmic value) with that of NAC60 and NAC33. The data were retrieved from the atlas transcriptomic dataset of cv. ‘Corvina’ ( Fasoli et al ., 2012 ). Each value represents the mean ±SD of three biological replicates. (B) Correlation between NAC61 expression level and sugar content in grape berries sampled from fruit set to maturity in cv. ‘Cabernet Sauvignon’ and cv. ‘Pinot noir’ ( Fasoli et al ., 2018 ). The black line represents the trend of the averaged values of the two varieties. The R 2 values shown correspond to the fitting of different polynomial regressions to each corresponding group of samples (orange for cv. ‘Cabernet Sauvignon’ samples, blue for cv. ‘Pinot noir’ samples, and black for the entire set of samples). (C) Correlation between NAC61 expression level and sugar content in grape berries sampled during post-harvest dehydration in six different varieties ( Zenoni et al ., 2016 ). (D) Correlation between NAC61 expression level and berry weight loss in cv. ‘Corvina’ berries sampled during traditional long and forced short post-harvest dehydration processes ( Zenoni et al ., 2020 ). Expression values were determined by <t>microarray</t> analysis and each value represents the mean ±SD from three biological replicates. (E) NAC61 GCNs based on berry, leaf, and tissue-independent (TI) datasets. Left, Venn diagram showing exclusive and shared genes based on the three datasets; right, three-dimensional plot of co-expressed genes in which NAC, WRKY, and ZIP family members already described as having involvement in berry ripening and/or stress responses are indicated.
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NAC61 expression analysis. (A) NAC61 expression behavior in grapevine organs throughout development (bar plot) and compared in the heatmap (logarithmic value) with that of NAC60 and NAC33. The data were retrieved from the atlas transcriptomic dataset of cv. ‘Corvina’ ( Fasoli et al ., 2012 ). Each value represents the mean ±SD of three biological replicates. (B) Correlation between NAC61 expression level and sugar content in grape berries sampled from fruit set to maturity in cv. ‘Cabernet Sauvignon’ and cv. ‘Pinot noir’ ( Fasoli et al ., 2018 ). The black line represents the trend of the averaged values of the two varieties. The R 2 values shown correspond to the fitting of different polynomial regressions to each corresponding group of samples (orange for cv. ‘Cabernet Sauvignon’ samples, blue for cv. ‘Pinot noir’ samples, and black for the entire set of samples). (C) Correlation between NAC61 expression level and sugar content in grape berries sampled during post-harvest dehydration in six different varieties ( Zenoni et al ., 2016 ). (D) Correlation between NAC61 expression level and berry weight loss in cv. ‘Corvina’ berries sampled during traditional long and forced short post-harvest dehydration processes ( Zenoni et al ., 2020 ). Expression values were determined by microarray analysis and each value represents the mean ±SD from three biological replicates. (E) NAC61 GCNs based on berry, leaf, and tissue-independent (TI) datasets. Left, Venn diagram showing exclusive and shared genes based on the three datasets; right, three-dimensional plot of co-expressed genes in which NAC, WRKY, and ZIP family members already described as having involvement in berry ripening and/or stress responses are indicated.

Journal: Journal of Experimental Botany

Article Title: NAC61 regulates late- and post-ripening osmotic, oxidative, and biotic stress responses in grapevine

doi: 10.1093/jxb/erad507

Figure Lengend Snippet: NAC61 expression analysis. (A) NAC61 expression behavior in grapevine organs throughout development (bar plot) and compared in the heatmap (logarithmic value) with that of NAC60 and NAC33. The data were retrieved from the atlas transcriptomic dataset of cv. ‘Corvina’ ( Fasoli et al ., 2012 ). Each value represents the mean ±SD of three biological replicates. (B) Correlation between NAC61 expression level and sugar content in grape berries sampled from fruit set to maturity in cv. ‘Cabernet Sauvignon’ and cv. ‘Pinot noir’ ( Fasoli et al ., 2018 ). The black line represents the trend of the averaged values of the two varieties. The R 2 values shown correspond to the fitting of different polynomial regressions to each corresponding group of samples (orange for cv. ‘Cabernet Sauvignon’ samples, blue for cv. ‘Pinot noir’ samples, and black for the entire set of samples). (C) Correlation between NAC61 expression level and sugar content in grape berries sampled during post-harvest dehydration in six different varieties ( Zenoni et al ., 2016 ). (D) Correlation between NAC61 expression level and berry weight loss in cv. ‘Corvina’ berries sampled during traditional long and forced short post-harvest dehydration processes ( Zenoni et al ., 2020 ). Expression values were determined by microarray analysis and each value represents the mean ±SD from three biological replicates. (E) NAC61 GCNs based on berry, leaf, and tissue-independent (TI) datasets. Left, Venn diagram showing exclusive and shared genes based on the three datasets; right, three-dimensional plot of co-expressed genes in which NAC, WRKY, and ZIP family members already described as having involvement in berry ripening and/or stress responses are indicated.

Article Snippet: The cDNA synthesis, labelling, hybridization, and washing steps were performed according to the Agilent Microarray-Based Gene Expression Analysis Guide ( https://www.agilent.com/cs/library/usermanuals/Public/G4140-90040_GeneExpression_OneColor_6.9.pdf ).

Techniques: Expressing, Microarray