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microarray-based dna methylation analysis  (Illumina Inc)


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    Illumina Inc microarray-based dna methylation analysis
    Microarray Based Dna Methylation Analysis, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/dna-based+microarray/dna+methylation+arrays/pm35687761-42-23-55
    Average 90 stars, based on 1 article reviews
    microarray-based dna methylation analysis - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    DNA Methylation Assay:

    Article Title: Robust molecular subgrouping and reference-free aneuploidy detection in medulloblastoma using low-depth whole genome bisulfite sequencing.
    Article Snippet: .. This classifier relies on data arising from Illumina DNA methylation microarray technology, a cost-effective assay whose current release interrogates ~ 935,000 CpGs across the human genome and is compatible with both fresh-frozen and FFPE DNA derivatives [15]. ..

    Article Title: Ultra-low-input cell-free DNA sequencing for tumor detection and characterization in a real-world pediatric brain tumor cohort.
    Article Snippet: .. Hovestadt VZM (2017) conumee: Enhanced copy-number variation analysis using Illumina DNA methylation arrays. h t t p s : / / b i o c o n d u c t o r . o r g / p a c k a g e s / r e l e a s e / b i o c / h t m l / c o n u m e e . h t m l Accessed. ..

    Article Title: Measuring technical variability in illumina DNA methylation microarrays.
    Article Snippet: .. In this study, we measure the impact of common sources of technical variability in Illumina DNA methylation microarray data, with a specific focus on positional biases inherent within the microarray technology. ..

    Article Title: Robust molecular subgrouping and reference-free aneuploidy detection in medulloblastoma using low-depth whole genome bisulfite sequencing
    Article Snippet: .. This classifier relies on data arising from Illumina DNA methylation microarray technology, a cost-effective assay whose current release interrogates ~ 935,000 CpGs across the human genome and is compatible with both fresh-frozen and FFPE DNA derivatives [ ]. ..

    Article Title: Measuring technical variability in illumina DNA methylation microarrays.
    Article Snippet: .. Experimental design to measure technical variability in Illumina’s MethylationEPIC microarrays We first sought to design an experiment that would allow a comparison of positional effects in Illumina’s DNA methylation microarrays. .. We concentrated on isolating the Illumina MethylationEPICv1 arrays.

    Article Title: Immune impacts of fire smoke exposure.
    Article Snippet: Exposure to fire smoke has become a global health concern and is associated with increased morbidity and mortality.. There is a lack of understanding of the specific immune mechanisms involved in smoke exposure, with preventive and targeted interventions needed.. After exposure to fire smoke, which includes PM2.5, toxic metals and perfluoroalkyl and polyfluoroalkyl substances, epidemiology-based studies have demonstrated increases in respiratory (for example, asthma exacerbation), cardiac (for example, myocardial infarction, arrhythmias), neurological (for example, stroke) and pregnancy-related (for example, low birthweight, premature birth) outcomes.

    Article Title: Robust molecular subgrouping and reference-free aneuploidy detection in medulloblastoma using low-depth whole genome bisulfite sequencing.
    Article Snippet: .. As the WGBS platform surveys single CpGs and each probe assessed by the DNA methylation microarray spans ~ 50bp (Illumina), CpGs were defined as overlapping if they were within 25bp in both directions of a CpG site. ..

    Article Title: DNA methylation as a contributor to dysregulation of STX6 and other frontotemporal Lobar degeneration genetic risk-associated loci.
    Article Snippet: .. The available DNA methylation profiles were derived using Illumina 450K/EPIC arrays, which are not comprehensive despite their coverage throughout the genome. ..

    Microarray:

    Article Title: Robust molecular subgrouping and reference-free aneuploidy detection in medulloblastoma using low-depth whole genome bisulfite sequencing.
    Article Snippet: .. This classifier relies on data arising from Illumina DNA methylation microarray technology, a cost-effective assay whose current release interrogates ~ 935,000 CpGs across the human genome and is compatible with both fresh-frozen and FFPE DNA derivatives [15]. ..

    Article Title: Measuring technical variability in illumina DNA methylation microarrays.
    Article Snippet: .. In this study, we measure the impact of common sources of technical variability in Illumina DNA methylation microarray data, with a specific focus on positional biases inherent within the microarray technology. ..

    Article Title: Robust molecular subgrouping and reference-free aneuploidy detection in medulloblastoma using low-depth whole genome bisulfite sequencing
    Article Snippet: .. This classifier relies on data arising from Illumina DNA methylation microarray technology, a cost-effective assay whose current release interrogates ~ 935,000 CpGs across the human genome and is compatible with both fresh-frozen and FFPE DNA derivatives [ ]. ..

    Article Title: Robust molecular subgrouping and reference-free aneuploidy detection in medulloblastoma using low-depth whole genome bisulfite sequencing.
    Article Snippet: .. As the WGBS platform surveys single CpGs and each probe assessed by the DNA methylation microarray spans ~ 50bp (Illumina), CpGs were defined as overlapping if they were within 25bp in both directions of a CpG site. ..

    Formalin-fixed Paraffin-Embedded:

    Article Title: Robust molecular subgrouping and reference-free aneuploidy detection in medulloblastoma using low-depth whole genome bisulfite sequencing.
    Article Snippet: .. This classifier relies on data arising from Illumina DNA methylation microarray technology, a cost-effective assay whose current release interrogates ~ 935,000 CpGs across the human genome and is compatible with both fresh-frozen and FFPE DNA derivatives [15]. ..

    Article Title: Robust molecular subgrouping and reference-free aneuploidy detection in medulloblastoma using low-depth whole genome bisulfite sequencing
    Article Snippet: .. This classifier relies on data arising from Illumina DNA methylation microarray technology, a cost-effective assay whose current release interrogates ~ 935,000 CpGs across the human genome and is compatible with both fresh-frozen and FFPE DNA derivatives [ ]. ..

    Comparison:

    Article Title: Measuring technical variability in illumina DNA methylation microarrays.
    Article Snippet: .. Experimental design to measure technical variability in Illumina’s MethylationEPIC microarrays We first sought to design an experiment that would allow a comparison of positional effects in Illumina’s DNA methylation microarrays. .. We concentrated on isolating the Illumina MethylationEPICv1 arrays.

    Derivative Assay:

    Article Title: DNA methylation as a contributor to dysregulation of STX6 and other frontotemporal Lobar degeneration genetic risk-associated loci.
    Article Snippet: .. The available DNA methylation profiles were derived using Illumina 450K/EPIC arrays, which are not comprehensive despite their coverage throughout the genome. ..



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    IHC staining of the NQO1 protein on tissue <t>microarray</t> of cervical lesions. (A) NQO1 protein was weakly positive in cervical SCC. (B) NQO1 protein showed diffuse and strong cytoplasmic-positive staining in cervical SCC. (C) NQO1 protein was negative in normal cervical epithelia. (D) NQO1 protein was positive in SCC.
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    Image Search Results


    IHC staining of the NQO1 protein on tissue microarray of cervical lesions. (A) NQO1 protein was weakly positive in cervical SCC. (B) NQO1 protein showed diffuse and strong cytoplasmic-positive staining in cervical SCC. (C) NQO1 protein was negative in normal cervical epithelia. (D) NQO1 protein was positive in SCC.

    Journal: BMC Cancer

    Article Title: NQO1 overexpression is associated with poor prognosis in squamous cell carcinoma of the uterine cervix

    doi: 10.1186/1471-2407-14-414

    Figure Lengend Snippet: IHC staining of the NQO1 protein on tissue microarray of cervical lesions. (A) NQO1 protein was weakly positive in cervical SCC. (B) NQO1 protein showed diffuse and strong cytoplasmic-positive staining in cervical SCC. (C) NQO1 protein was negative in normal cervical epithelia. (D) NQO1 protein was positive in SCC.

    Article Snippet: DNA was extracted from paraffin-embedded cervical lesion specimens using the High Pure PCR Template Preparation kit (Cat.11796828001, Roche, Penzberg, Germany), and HPV detection and genotyping were performed using a PCR-based HPV-DNA microarray system (Biomedlab, Seoul, South Korea).

    Techniques: Immunohistochemistry, Microarray, Staining