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dataanalysis-otof-default script  (Bruker Corporation)


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    Bruker Corporation dataanalysis-otof-default script
    Dataanalysis Otof Default Script, supplied by Bruker Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/dataanalysis+script/dataanalysis+otof+default+script/pmc08905767-77-10-14
    Average 90 stars, based on 1 article reviews
    dataanalysis-otof-default script - by Bioz Stars, 2026-09
    90/100 stars

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    Software:

    Article Title: Proteomic and Transcriptomic Analysis Identify Spliceosome as a Significant Component of the Molecular Machinery in the Pituitary Tumors Derived from POU1F1 - and NR5A1 -Cell Lineages
    Article Snippet: Protein identifications were made processing the raw files with the DataAnalysis-otof-default script from the Bruker Compass DataAnalysis software (version 4.4 SR1, Bruker, Billerica, MA, USA), the Protein Scape software (version 3.1.3 461, Bruker) using Mascot 2.4.1 (Matrix Science, City of Industry, CA, USA): trypsin as the digestion enzyme, two missed cleavages were allowed, carbamidomethyl Cys as a fixed modification and oxidation on Met as variable modification.

    Article Title: The kinome, cyclins and cyclin-dependent kinases of pituitary adenomas, a look into the gene expression profile among tumors from different lineages
    Article Snippet: Protein identifications were made processing the raw files with the DataAnalysis-otof-default script from the Bruker Compass DataAnalysis software (version 4.4 SR1, Bruker), the Protein Scape software (version 3.1.3 461, Bruker) using Mascot 2.4.1 (Matrix Science): trypsin as the digestion enzyme, two missed cleavages allowed, carbamidomethyl Cys as a fixed modification and oxidation on Met as variable modification.

    Article Title: Seeding Public Goods Is Essential for Maintaining Cooperation in Pseudomonas aeruginosa
    Article Snippet: Protein identifications were made processing the raw files with the DataAnalysis-otof-default script from the Bruker Compass Data Analysis software (version 4.2 SR2, Bruker), the ProteinScape software (version 3.1, Bruker) using Mascot 2.4.1 (Matrix Science): trypsin as the digestion enzyme, one miscleavage allowed, carbamidomethyl Cys as a fixed modification and oxidation on Met as variable modification.

    Modification:

    Article Title: Proteomic and Transcriptomic Analysis Identify Spliceosome as a Significant Component of the Molecular Machinery in the Pituitary Tumors Derived from POU1F1 - and NR5A1 -Cell Lineages
    Article Snippet: Protein identifications were made processing the raw files with the DataAnalysis-otof-default script from the Bruker Compass DataAnalysis software (version 4.4 SR1, Bruker, Billerica, MA, USA), the Protein Scape software (version 3.1.3 461, Bruker) using Mascot 2.4.1 (Matrix Science, City of Industry, CA, USA): trypsin as the digestion enzyme, two missed cleavages were allowed, carbamidomethyl Cys as a fixed modification and oxidation on Met as variable modification.

    Article Title: The kinome, cyclins and cyclin-dependent kinases of pituitary adenomas, a look into the gene expression profile among tumors from different lineages
    Article Snippet: Protein identifications were made processing the raw files with the DataAnalysis-otof-default script from the Bruker Compass DataAnalysis software (version 4.4 SR1, Bruker), the Protein Scape software (version 3.1.3 461, Bruker) using Mascot 2.4.1 (Matrix Science): trypsin as the digestion enzyme, two missed cleavages allowed, carbamidomethyl Cys as a fixed modification and oxidation on Met as variable modification.

    Article Title: Seeding Public Goods Is Essential for Maintaining Cooperation in Pseudomonas aeruginosa
    Article Snippet: Protein identifications were made processing the raw files with the DataAnalysis-otof-default script from the Bruker Compass Data Analysis software (version 4.2 SR2, Bruker), the ProteinScape software (version 3.1, Bruker) using Mascot 2.4.1 (Matrix Science): trypsin as the digestion enzyme, one miscleavage allowed, carbamidomethyl Cys as a fixed modification and oxidation on Met as variable modification.



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    Image Search Results


    In order to characterize variation introduced by deconvolution, we generated output from five different deconvolution pathways for the same input data, directing these outputs to msAlign format for identification by TopPIC. Bruker maXis data were processed by all pipelines except for ThermoFisher Xtract, and ThermoFisher Orbitrap data were processed by all pipelines except for Bruker DataAnalysis.

    Journal: Journal of Proteome Research

    Article Title: Comparing Top-Down Proteoform Identification: Deconvolution, PrSM Overlap, and PTM Detection

    doi: 10.1021/acs.jproteome.2c00673

    Figure Lengend Snippet: In order to characterize variation introduced by deconvolution, we generated output from five different deconvolution pathways for the same input data, directing these outputs to msAlign format for identification by TopPIC. Bruker maXis data were processed by all pipelines except for ThermoFisher Xtract, and ThermoFisher Orbitrap data were processed by all pipelines except for Bruker DataAnalysis.

    Article Snippet: A Visual Basic Script for Bruker DataAnalysis (described below) performed feature detection from the raw Q-TOF data, deconvolved MS/MS peak lists, and exported msAlign files.

    Techniques: Generated