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10X Genomics snatac seq data processing snatac seq reads
Snatac Seq Data Processing Snatac Seq Reads, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/data+processing/seq+snatac/pm42297833-335-11-18
Average 86 stars, based on 1 article reviews
snatac seq data processing snatac seq reads - by Bioz Stars, 2026-11
86/100 stars

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Related Articles

other:

Article Title: Spatial gene regulatory networks driving cell state transitions during human liver disease.
Article Snippet: snATAC-seq fastq files were processed using 10X Genomics custom pipeline for snATAC-seq, cellranger-atac v.1.2.0 and was mapped to hg38 custom genome with all the default parameters.

Article Title: Single-cell map of the healthy human immune system across the lifespan reveals unique infant immune signatures.
Article Snippet: Supplementary Data 7). fGSEA79 package was used to visualize the data. snATAC-seq data processing snATAC-seq reads were aligned (10x Genomics GRCh38 reference 2020-A) and processed using Cell Ranger ATAC v2.1.0.

Article Title: A longitudinal single-cell and spatial multiomic atlas of pediatric high-grade glioma
Article Snippet: Cell Ranger (snRNA-Seq and snATAC-Seq processing) v3.1.0 , https://www.10xgenomics.com/support/software/cell-ranger/latest/analysis/inputs/cr-inputs-overview , 10x Genomics.

Software:


High Throughput Screening Assay:

Article Title: A high-resolution meiotic crossover map from single-nucleus ATAC-seq reveals insights into the recombination landscape in mammals
Article Snippet: .. To assay meiotic crossovers with high throughput, we generated snATAC-seq libraries (10x Genomics) using FACS-sorted haploid nuclei isolated from six F hybrid male mice; three F1. ..

Generated:

Article Title: A high-resolution meiotic crossover map from single-nucleus ATAC-seq reveals insights into the recombination landscape in mammals
Article Snippet: .. To assay meiotic crossovers with high throughput, we generated snATAC-seq libraries (10x Genomics) using FACS-sorted haploid nuclei isolated from six F hybrid male mice; three F1. ..

FACS:

Article Title: A high-resolution meiotic crossover map from single-nucleus ATAC-seq reveals insights into the recombination landscape in mammals
Article Snippet: .. To assay meiotic crossovers with high throughput, we generated snATAC-seq libraries (10x Genomics) using FACS-sorted haploid nuclei isolated from six F hybrid male mice; three F1. ..

Isolation:

Article Title: A high-resolution meiotic crossover map from single-nucleus ATAC-seq reveals insights into the recombination landscape in mammals
Article Snippet: .. To assay meiotic crossovers with high throughput, we generated snATAC-seq libraries (10x Genomics) using FACS-sorted haploid nuclei isolated from six F hybrid male mice; three F1. ..

Concentration Assay:

Article Title: MAPK14 converges on key transcriptional machinery to promote vascular smooth muscle cell degeneration in abdominal aortic aneurysm.
Article Snippet: Immunostained images were acquired via confocal microscopy (LSM 900, Zeiss). .. High-quality nuclei suspensions (>10,000 nuclei per group) were obtained at a concentration of 4000 nuclei/μl from 3 pooled AAs per group. snRNA-seq and snATAC-seq libraries were prepared according to the user guide (10X Genomics, CG000338). .. Dihydroethidium (DHE) (Thermo Scientific, D23107) was used to detect the ROS content in AAs as previously described.71 Briefly, frozen sections were washed with PBS and then incubated with 10 μM DHE for 30min at 37 °C in the dark.

Gene Expression:

Article Title: Single-nucleus multiomics reveals the gene-regulatory networks underlying sex determination of murine primordial germ cells
Article Snippet: .. Combined multiome analysis of single-nucleus gene expression and chromatin accessibility of mouse PGCs To understand how intrinsic transcription networks inside PGCs and external cues from the gonadal environment control PGC sex determination, we performed combined snRNA- seq and snATAC- seq (10x Genomics Multiome) for all cell populations in mouse fetal gonads. ..

Control:

Article Title: Single-nucleus multiomics reveals the gene-regulatory networks underlying sex determination of murine primordial germ cells
Article Snippet: .. Combined multiome analysis of single-nucleus gene expression and chromatin accessibility of mouse PGCs To understand how intrinsic transcription networks inside PGCs and external cues from the gonadal environment control PGC sex determination, we performed combined snRNA- seq and snATAC- seq (10x Genomics Multiome) for all cell populations in mouse fetal gonads. ..

Pyrolysis Gas Chromatography:

Article Title: Single-nucleus multiomics reveals the gene-regulatory networks underlying sex determination of murine primordial germ cells
Article Snippet: .. Combined multiome analysis of single-nucleus gene expression and chromatin accessibility of mouse PGCs To understand how intrinsic transcription networks inside PGCs and external cues from the gonadal environment control PGC sex determination, we performed combined snRNA- seq and snATAC- seq (10x Genomics Multiome) for all cell populations in mouse fetal gonads. ..



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