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custom automated experimental design and data processing workflow  (MathWorks Inc)


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    MathWorks Inc custom automated experimental design and data processing workflow
    Custom Automated Experimental Design And Data Processing Workflow, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/data+processing+workflow/pm39288179-105-29-33
    Average 90 stars, based on 1 article reviews
    custom automated experimental design and data processing workflow - by Bioz Stars, 2026-10
    90/100 stars

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    other:

    Article Title: STING induces HOIP-mediated synthesis of M1 ubiquitin chains to stimulate NF-κB signaling
    Article Snippet: For super-resolution imaging, fixed and/or immunostained cells were imaged on a Zeiss LSM 880 Airyscan Confocal Microscope using a Zeiss 63×1.4 NA Plan-Apochromat objective, equipped with a Piezo high-precision stage at room temperature.

    Article Title: STING induces HOIP-mediated synthesis of M1 ubiquitin chains to stimulate NF-κB signaling.
    Article Snippet: STING activation by cyclic dinucleotides induces IRF3and NF-κBmediated gene expression in mammals, as well as lipidation of LC3B at Golgi-related membranes.. While mechanisms of the IRF3 response are well understood, the mechanisms of NF-κB activation via STING remain unclear.. We report here that STING activation induces linear/M1-linked ubiquitin chain (M1-Ub) formation and recruitment of the LUBAC E3 ligase, HOIP, to LC3B-associated Golgi membranes where ubiquitin is also localized.

    Article Title: Enhancing Green Energy Systems with Matlab Image Processing: Automatic Tracking of Sun Position for Optimized Solar Panel Efficiency
    Article Snippet: This research describes a comprehensive MATLAB workflow for image acquisition, preprocessing, and advanced image processing, including sun detection using various blob detection techniques.

    Article Title: Sex differences in quantitative ultrasonographic measurements of the rectus femoris in children.
    Article Snippet: 1Department of Physical Therapy, Faculty of Medicine, University of Chile, Santiago, Chile 2Research, Innovation, and Development Section in Kinesiology, Kinesiology Unit, San José Hospital, Santiago, Chile 3Centre for Human Performance, School of Medical and Health Sciences, Edith Cowan University, Joondalup, Australia 4Exercise Research Laboratory, Physical Education, Physiotherapy and Dance School, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil

    Generated:

    Article Title: Microbial community interactions on a chip.
    Article Snippet: .. To manage the complexity of the set- up and data generated by threefactorial combinatorial experiments for large numbers of microbial strains, we developed a custom automated experimental design and data processing workflow in MATLAB (The MathWorks, Natick, MA) for the μCI device (Fig. 2). ..

    Article Title: Use of radiofrequency electromagnetic fields applied by capacitive hyperthermia for glioblastoma therapy.
    Article Snippet: .. Three-dimensional voxel models of the GTV and the 3-mm-wide peritumoral boundary zone were generated with the resolution of the underlying CT scan using a previously developed workflow in MATLAB [26]. ..

    Computed Tomography:

    Article Title: Use of radiofrequency electromagnetic fields applied by capacitive hyperthermia for glioblastoma therapy.
    Article Snippet: .. Three-dimensional voxel models of the GTV and the 3-mm-wide peritumoral boundary zone were generated with the resolution of the underlying CT scan using a previously developed workflow in MATLAB [26]. ..



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    Image Search Results


    Putative producers of compounds of interest are prioritized through cross-validation of the top ranked strains via Protein Language Model (PLM) embeddings and via our in-house developed Workflow for Intelligent Structural Elucidation (WISE).

    Journal: npj Antimicrobials and Resistance

    Article Title: Accelerating natural product discovery with linked MS-genomics and language/transformer-based models

    doi: 10.1038/s44259-026-00206-7

    Figure Lengend Snippet: Putative producers of compounds of interest are prioritized through cross-validation of the top ranked strains via Protein Language Model (PLM) embeddings and via our in-house developed Workflow for Intelligent Structural Elucidation (WISE).

    Article Snippet: The data processing Workflow for Intelligent Structural Elucidation (WISE) is partially based on Mestrenova v15.0.1-35756 which is commercially available from Mestrelab Research S. L. ( www.mestrelab.com ).

    Techniques: Biomarker Discovery

    A Overview of the cheminformatics analysis workflow (WISE) to annotate individual molecules from raw liquid chromatography-tandem mass spectral (LC-MS/MS) data of fermentation extracts. B Distribution of WISE scores for correct structures (Real) versus isobaric decoy structures (within 0.005 m/z) with different molecular formulae (Decoy) from the Critical Assessment for Small Molecule Identification (CASMI2022) dataset. Low and high WISE score thresholds of 0.35 and 0.65 respectively are annotated for reference. C Receiver Operating Characteristic (ROC) curve demonstrating the discrimination of correct structures from decoys with differing molecular formulae within a 0.005 m/z window. AUC = Area Under Curve. CI = Confidence Interval. Detailed data in Table .

    Journal: npj Antimicrobials and Resistance

    Article Title: Accelerating natural product discovery with linked MS-genomics and language/transformer-based models

    doi: 10.1038/s44259-026-00206-7

    Figure Lengend Snippet: A Overview of the cheminformatics analysis workflow (WISE) to annotate individual molecules from raw liquid chromatography-tandem mass spectral (LC-MS/MS) data of fermentation extracts. B Distribution of WISE scores for correct structures (Real) versus isobaric decoy structures (within 0.005 m/z) with different molecular formulae (Decoy) from the Critical Assessment for Small Molecule Identification (CASMI2022) dataset. Low and high WISE score thresholds of 0.35 and 0.65 respectively are annotated for reference. C Receiver Operating Characteristic (ROC) curve demonstrating the discrimination of correct structures from decoys with differing molecular formulae within a 0.005 m/z window. AUC = Area Under Curve. CI = Confidence Interval. Detailed data in Table .

    Article Snippet: The data processing Workflow for Intelligent Structural Elucidation (WISE) is partially based on Mestrenova v15.0.1-35756 which is commercially available from Mestrelab Research S. L. ( www.mestrelab.com ).

    Techniques: Liquid Chromatography, Liquid Chromatography with Mass Spectroscopy

    A Elucidated biosynthetic gene cluster BGC0000709, responsible for neomycin production. B Similarity (%) of each embedded protein and sequence similarity (%) of the top-scoring protein matches. C Predicted protein structures of the top matches for Fe-S oxidoreductase ( CAF33317 ) from neomycin BGC. D Heatmap of WISE scores for strain-media combinations derived from the liquid chromatography-tandem mass spectrometry (LC-MS/MS) data of fermentation extracts. Only strains with at least 1 media combination with non-zero WISE score are shown. Activated strains (if any) are referred to by their parent strain instead of individually (details of the activated strains are in Table ). E Structure of neomycin B. F Workflow of the co-occurrence strategy and matrix ranking table with 0.35 WISE score and 0.75 PLM score cutoff. Strains that have been cross validated are highlighted in green or yellow, indicating whether these compounds were present (green) or absent (yellow). Lines indicating higher confidence thresholds of 0.65 WISE score (in red) and 2.5 PLM score (in blue) are also included.

    Journal: npj Antimicrobials and Resistance

    Article Title: Accelerating natural product discovery with linked MS-genomics and language/transformer-based models

    doi: 10.1038/s44259-026-00206-7

    Figure Lengend Snippet: A Elucidated biosynthetic gene cluster BGC0000709, responsible for neomycin production. B Similarity (%) of each embedded protein and sequence similarity (%) of the top-scoring protein matches. C Predicted protein structures of the top matches for Fe-S oxidoreductase ( CAF33317 ) from neomycin BGC. D Heatmap of WISE scores for strain-media combinations derived from the liquid chromatography-tandem mass spectrometry (LC-MS/MS) data of fermentation extracts. Only strains with at least 1 media combination with non-zero WISE score are shown. Activated strains (if any) are referred to by their parent strain instead of individually (details of the activated strains are in Table ). E Structure of neomycin B. F Workflow of the co-occurrence strategy and matrix ranking table with 0.35 WISE score and 0.75 PLM score cutoff. Strains that have been cross validated are highlighted in green or yellow, indicating whether these compounds were present (green) or absent (yellow). Lines indicating higher confidence thresholds of 0.65 WISE score (in red) and 2.5 PLM score (in blue) are also included.

    Article Snippet: The data processing Workflow for Intelligent Structural Elucidation (WISE) is partially based on Mestrenova v15.0.1-35756 which is commercially available from Mestrelab Research S. L. ( www.mestrelab.com ).

    Techniques: Sequencing, Derivative Assay, Liquid Chromatography, Mass Spectrometry, Liquid Chromatography with Mass Spectroscopy