snrna seq data preprocessing cellranger software  (10X Genomics)

Journal: Neurobiology of Pain

Article Title: Cerebral peak alpha frequency: Associations with chronic pain onset and pain modulation

doi: 10.1016/j.ynpai.2025.100180

Figure Lengend Snippet: Erotica-induced modulation of NFR, pain, N2 and P2 in studies 2 and 3.

Article Snippet: For analysis of PEPs during CPM and ECON, EEG data were preprocessed and analyzed in BrainVision Analyzer Software (Version 2.1.2.327).

Techniques:

Journal: Neurobiology of Pain

Article Title: Cerebral peak alpha frequency: Associations with chronic pain onset and pain modulation

doi: 10.1016/j.ynpai.2025.100180

Figure Lengend Snippet: Mutilation-induced modulation of NFR, pain, N2 and P2 in studies 2 & 3.

Article Snippet: For analysis of PEPs during CPM and ECON, EEG data were preprocessed and analyzed in BrainVision Analyzer Software (Version 2.1.2.327).

Techniques:

Journal: Neurobiology of Pain

Article Title: Cerebral peak alpha frequency: Associations with chronic pain onset and pain modulation

doi: 10.1016/j.ynpai.2025.100180

Figure Lengend Snippet: Grand average EEG waveforms at Cz for ECON. Time windows used for analysis of N2 (90–140 ms) and P2 (280–350 ms) are shaded.

Article Snippet: For analysis of PEPs during CPM and ECON, EEG data were preprocessed and analyzed in BrainVision Analyzer Software (Version 2.1.2.327).

Techniques:

Journal: bioRxiv

Article Title: Robust characterization of selectivity of individual neurons to distinct task-relevant behavioral states using calcium imaging

doi: 10.1101/2024.11.30.626195

Figure Lengend Snippet: (A) Key parameters involved in each of the three major data processing stages from data collection to assessment of selectivity. (B) Using a single coordinate to characterize the position of the mouse in the maze: head-centroid position versus body-centroid position. (C) Non-binned calcium transients (top) versus 1s-binned calcium transients (bottom). The 1s-binned calcium transients were obtained by averaging values in a moving 1-second window. (D) Illustration of the types of neural data investigated in the current study. Raw Ca traces and Ca events were preprocessed and output directly from Inscopix Data Preprocessing Software (IDPS). Convolved Ca events were obtained by applying a convolution kernel to the Ca events. Ca traces analyzed in the current study referred to the lowpass-subtracted rectified Ca traces, which were obtained by subtracting the low-pass component from the raw Ca traces and rectifying them. (E) Illustration of the number-matched method. The time spent in open arms is shown by gray bars. Yellow bars refer to random subsets of closed-arm bouts. (F) Representations of the procedures of the four shuffling methods, arranged from the lowest degree of randomness to the highest degree of randomness.

Article Snippet: Raw movie data were preprocessed using the Inscopix Data Preprocessing Software (IDPS).

Techniques: Software