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proprietary combimatrix microarray imager software  (CombiMatrix)

 
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    Structured Review

    CombiMatrix proprietary combimatrix microarray imager software
    Proprietary Combimatrix Microarray Imager Software, supplied by CombiMatrix, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/combimatrix+microarray+imager/microarray+imager+software/pmc03271758-393-4-5
    Average 90 stars, based on 1 article reviews
    proprietary combimatrix microarray imager software - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    Microarray:

    Article Title: Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Article Snippet: cDNAs were finally purified using the NucleoSpin ExtractII kit from Macherey & Nagel and subjected to sequencing on the ROCHE 454 GS FLX platform according to manufacturer's instructions. .. Slides were scanned with a Perkin Elmer Scanarray 4000 XL raw data was extracted with Scanarray Express 4.0 and Microarray Imager (CombiMatrix) software. ..

    Article Title: Response of the goat mammary gland to infection with Staphylococcus aureus revealed by gene expression profiling in milk somatic and white blood cells
    Article Snippet: .. The hybridised arrays were scanned with a GenePix 4000B microarray scanner (Axon, Toronto, CA) and the images (TIF format) were exported to the CombiMatrix Microarray Imager Software, to perform quality checks of the hybridizations and the spots on the slide. .. The hybridised arrays were scanned with a GenePix 4000B microarray scanner (Axon, Toronto, CA) and the images (TIF format) were exported to the CombiMatrix Microarray Imager Software, to perform quality checks of the hybridizations and the spots on the slide.

    Article Title: Seasonal Changes in Bacterial and Archaeal Gene Expression Patterns across Salinity Gradients in the Columbia River Coastal Margin
    Article Snippet: .. Hybridization images were obtained using a ScanArray 4000 fluorescent scanner (PerkinElmer, Waltham, MA) at 5 micron resolution, and quantified with Microarray Imager software (CombiMatrix). .. For microarray re-use, the labeled targets were chemically denatured and removed from microarray probes as described in the CombiMatrix stripping protocol ( http://www.combimatrix.com/docs/PTL002_01_4x2K_StrippingReHyb.pdf ).

    Article Title: Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species
    Article Snippet: Data extraction was done using CombiMatrix Microarray Imager software and a quantile normalization of data was performed using Combimatrix Blist v0.6 software. .. Data extraction was done using CombiMatrix Microarray Imager software and a quantile normalization of data was performed using Combimatrix Blist v0.6 software. .. Expression data are available from the National Center for Biotechnology Information (NCBI) [GenBank: Gene Expression Omnibus accession number GSE14276 ].

    Article Title: Common bean ( Phaseolus vulgaris L.) PvTIFY orchestrates global changes in transcript profile response to jasmonate and phosphorus deficiency
    Article Snippet: .. The raw intensity data were first processed using the Combimatrix Microarray Imager software. ..

    Software:

    Article Title: Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Article Snippet: cDNAs were finally purified using the NucleoSpin ExtractII kit from Macherey & Nagel and subjected to sequencing on the ROCHE 454 GS FLX platform according to manufacturer's instructions. .. Slides were scanned with a Perkin Elmer Scanarray 4000 XL raw data was extracted with Scanarray Express 4.0 and Microarray Imager (CombiMatrix) software. ..

    Article Title: Response of the goat mammary gland to infection with Staphylococcus aureus revealed by gene expression profiling in milk somatic and white blood cells
    Article Snippet: .. The hybridised arrays were scanned with a GenePix 4000B microarray scanner (Axon, Toronto, CA) and the images (TIF format) were exported to the CombiMatrix Microarray Imager Software, to perform quality checks of the hybridizations and the spots on the slide. .. The hybridised arrays were scanned with a GenePix 4000B microarray scanner (Axon, Toronto, CA) and the images (TIF format) were exported to the CombiMatrix Microarray Imager Software, to perform quality checks of the hybridizations and the spots on the slide.

    Article Title: Seasonal Changes in Bacterial and Archaeal Gene Expression Patterns across Salinity Gradients in the Columbia River Coastal Margin
    Article Snippet: .. Hybridization images were obtained using a ScanArray 4000 fluorescent scanner (PerkinElmer, Waltham, MA) at 5 micron resolution, and quantified with Microarray Imager software (CombiMatrix). .. For microarray re-use, the labeled targets were chemically denatured and removed from microarray probes as described in the CombiMatrix stripping protocol ( http://www.combimatrix.com/docs/PTL002_01_4x2K_StrippingReHyb.pdf ).

    Article Title: Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species
    Article Snippet: Data extraction was done using CombiMatrix Microarray Imager software and a quantile normalization of data was performed using Combimatrix Blist v0.6 software. .. Data extraction was done using CombiMatrix Microarray Imager software and a quantile normalization of data was performed using Combimatrix Blist v0.6 software. .. Expression data are available from the National Center for Biotechnology Information (NCBI) [GenBank: Gene Expression Omnibus accession number GSE14276 ].

    Article Title: Common bean ( Phaseolus vulgaris L.) PvTIFY orchestrates global changes in transcript profile response to jasmonate and phosphorus deficiency
    Article Snippet: .. The raw intensity data were first processed using the Combimatrix Microarray Imager software. ..

    other:

    Article Title: General and species-specific transcriptional responses to downy mildew infection in a susceptible ( Vitis vinifera ) and a resistant ( V. riparia ) grapevine species
    Article Snippet: Total RNA (1 μg) was amplified using the SuperScript Indirect RNA Amplification System (Invitrogen, USA), to incorporate amino-allyl UTP molecules (aRNA) and a fluorescent label (Alexa Fluor 647).

    Article Title: Resistance to Plasmopara viticola in a grapevine segregating population is associated with stilbenoid accumulation and with specific host transcriptional responses
    Article Snippet: Total RNA (1 μg) was amplified using the Amino Allyl MessageAmpII aRNA Amplification kit (Ambion, USA) and the resulted amminoallyl-aRNA was conjugated to a fluorescent label (Cy-5).

    Article Title: Common bean ( Phaseolus vulgaris L.) PvTIFY orchestrates global changes in transcript profile response to jasmonate and phosphorus deficiency
    Article Snippet: After hybridization and washing, the microarray was dipped in imaging solution, covered with LifterSlip, and then scanned using a GenePix 4000B microarray scanner (Axon) and the accompanying acquisition software (CombiMatrix Microarray Imager Software).

    Hybridization:

    Article Title: Seasonal Changes in Bacterial and Archaeal Gene Expression Patterns across Salinity Gradients in the Columbia River Coastal Margin
    Article Snippet: .. Hybridization images were obtained using a ScanArray 4000 fluorescent scanner (PerkinElmer, Waltham, MA) at 5 micron resolution, and quantified with Microarray Imager software (CombiMatrix). .. For microarray re-use, the labeled targets were chemically denatured and removed from microarray probes as described in the CombiMatrix stripping protocol ( http://www.combimatrix.com/docs/PTL002_01_4x2K_StrippingReHyb.pdf ).

    Extraction:

    Article Title: Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species
    Article Snippet: Data extraction was done using CombiMatrix Microarray Imager software and a quantile normalization of data was performed using Combimatrix Blist v0.6 software. .. Data extraction was done using CombiMatrix Microarray Imager software and a quantile normalization of data was performed using Combimatrix Blist v0.6 software. .. Expression data are available from the National Center for Biotechnology Information (NCBI) [GenBank: Gene Expression Omnibus accession number GSE14276 ].



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    CombiMatrix microarray imager combimatrix microarray imager
    Schematic of the CLADE approach. CLADE as utilized in this study starts at the top of the schematic with an initial choice of DNA sequences. These sequences may be generated entirely in silico , or optionally, as with some of the sequences here, utilizing prior knowledge generated in vitro . These sequences are synthesized on a custom <t>microarray</t> and bound with the chosen ligand, here the APC protein. Analysis of binding intensities gives a distribution of fitnesses; the frequency distribution of Generation 1 binding to APC protein is shown by way of example. Some of these sequences are selected in silico , based on the in vitro score distribution, here using tournament selection (see Materials and methods section). These sequences are then mutated in silico to generate a new sequence set which can then be synthesised in vitro , and so on round the cycle as often as is required. The final aptamer set offers a greatly increased binding affinity to the ligand.
    Microarray Imager Combimatrix Microarray Imager, supplied by CombiMatrix, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Image Search Results


    Schematic of the CLADE approach. CLADE as utilized in this study starts at the top of the schematic with an initial choice of DNA sequences. These sequences may be generated entirely in silico , or optionally, as with some of the sequences here, utilizing prior knowledge generated in vitro . These sequences are synthesized on a custom microarray and bound with the chosen ligand, here the APC protein. Analysis of binding intensities gives a distribution of fitnesses; the frequency distribution of Generation 1 binding to APC protein is shown by way of example. Some of these sequences are selected in silico , based on the in vitro score distribution, here using tournament selection (see Materials and methods section). These sequences are then mutated in silico to generate a new sequence set which can then be synthesised in vitro , and so on round the cycle as often as is required. The final aptamer set offers a greatly increased binding affinity to the ligand.

    Journal: Nucleic Acids Research

    Article Title: Array-based evolution of DNA aptamers allows modelling of an explicit sequence-fitness landscape

    doi: 10.1093/nar/gkn899

    Figure Lengend Snippet: Schematic of the CLADE approach. CLADE as utilized in this study starts at the top of the schematic with an initial choice of DNA sequences. These sequences may be generated entirely in silico , or optionally, as with some of the sequences here, utilizing prior knowledge generated in vitro . These sequences are synthesized on a custom microarray and bound with the chosen ligand, here the APC protein. Analysis of binding intensities gives a distribution of fitnesses; the frequency distribution of Generation 1 binding to APC protein is shown by way of example. Some of these sequences are selected in silico , based on the in vitro score distribution, here using tournament selection (see Materials and methods section). These sequences are then mutated in silico to generate a new sequence set which can then be synthesised in vitro , and so on round the cycle as often as is required. The final aptamer set offers a greatly increased binding affinity to the ligand.

    Article Snippet: Image analysis used Combimatrix Microarray Imager ( https://webapps.combimatrix.com/customarray/customarrayHome.jsp ).

    Techniques: Generated, In Silico, In Vitro, Synthesized, Microarray, Protein Binding, Binding Assay, Selection, Sequencing