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Pathogenomix Inc commercial cloud-based software platform ripseq
Commercial Cloud Based Software Platform Ripseq, supplied by Pathogenomix Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cloud-based+software+platform/ripseq+software/pm31229651-66-9-11
Average 90 stars, based on 1 article reviews
commercial cloud-based software platform ripseq - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Software:

Article Title: Eikenella exigua sp. nov., isolated from brain abscess and blood.
Article Snippet: .. It was analysed by using RipSeq mixed software (Pathogenomix) and found to represent a mixture of the nusG gene for E. corrodens and E. exigua, respectively. .. The Illumina mean sequencing coverage for E. exigua strain PXXT was 92×, further supplemented with MinION long read sequencing.

Article Title: Identification of microbial agents in culture-negative brain abscess samples by 16S/18S rRNA gene PCR and sequencing.
Article Snippet: .. Chromatograms were analyzed using the Ripseq software (Pathogenomix, Santa Cruz, CA, Kommedal et al., 2014). .. Species identification was performed according to the Clinical and Laboratory Standards Institute (CLSI) guidelines (CLSI, 2018).

Article Title: Gastrointestinal colonization of extended-spectrum beta-lactamase-producing bacteria among children below five years of age hospitalized with fever in Dar es Salaam, Tanzania.
Article Snippet: Sequencing was done using the same reverse primers sed in PCR reaction and BigDye Terminator v.1.1 Cycle Sequencing it (Applied Biosystems, Foster City, CA, USA) and an ABI PRISM 730 DNA Analyzer (Applied Biosystems). .. Sequences were analysed sing the RipSeq software (Pathogenomix Inc., CA, USA). ..

Article Title: Diagnostics with clinical microbiome-based identification of microorganisms in patients with brain abscesses-a prospective cohort study.
Article Snippet: Department of Clinical Microbiology, Copenhagen University Hospital Rigshospitalet, Copenhagen; Department of Clinical Microbiology, Copenhagen University Hospital Hvidovre, Hvidovre; Department of Clinical Microbiology, Odense University Hospital, Odense; Department of Neurosurgery, Copenhagen University Hospital Rigshospitalet, Copenhagen; Department of Neuroanesthesiology, Copenhagen University Hospital Rigshospitalet, Copenhagen; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen; Department of Infectious Diseases, Copenhagen University Hospital Rigshospitalet, Copenhagen; and Department of Bacteria, Fungi and Parasites, Statens Serum Institut, Copenhagen, Denmark

Article Title: Phaeohyphomycotic pseudotumor of the right elbow caused by Trematosphaeria grisea
Article Snippet: .. Fungal ribosomal internal transcribed spacer region DNA sequencing was conducted using RipSeq Single software (Pathogenomix), which provided a 100% match to several CBS reference strains deposited in GenBank (PMID: 25737597 ). ..

Article Title: Validation and Retrospective Clinical Evaluation of a Quantitative 16S rRNA Gene Metagenomic Sequencing Assay for Bacterial Pathogen Detection in Body Fluids.
Article Snippet: Disclosure: O.K. has consulted as a medical adviser for Pathogenomix Inc. and has contributed to the development of the RipSeq software. .. He is also a minor shareholder in Pathogenomix Inc. O.S. have contributed to the development of the RipSeq software and is a shareholder in Pathogenomix Inc. Pathogenomix Inc. (Santa Cruz, CA) funded this study. ..

DNA Sequencing:

Article Title: Phaeohyphomycotic pseudotumor of the right elbow caused by Trematosphaeria grisea
Article Snippet: .. Fungal ribosomal internal transcribed spacer region DNA sequencing was conducted using RipSeq Single software (Pathogenomix), which provided a 100% match to several CBS reference strains deposited in GenBank (PMID: 25737597 ). ..

other:

Article Title: Validation and Retrospective Clinical Evaluation of a Quantitative 16S rRNA Gene Metagenomic Sequencing Assay for Bacterial Pathogen Detection in Body Fluids.
Article Snippet: Sequence data were analyzed using a commercial cloud-based software platform RipSeq (Pathogenomix, Santa Cruz, CA).



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