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Structured Review

Accelrys sequence analysis software package
Sequence Analysis Software Package, supplied by Accelrys, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/analysis+software+packages/analysis+package+sequence+software/us12472129-513-3-7
Average 86 stars, based on 1 article reviews
sequence analysis software package - by Bioz Stars, 2026-10
86/100 stars

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Related Articles

Sequencing:

Article Title: Molecular structure and characterization of a novel murine ABC transporter, Abca13.
Article Snippet: We report the isolation and structural characterization of the full-length gene and cDNA for a novel mouse ATP-binding cassette (ABC) transporter, Abca13.. The mRNA, isolated from mouse kidney, is 6.7 kb in size and encodes a protein consisting of 2143 amino acids with a predicted molecular weight of 240 kDa.. The Abca13 gene consists of 44 exons which span 360 kb of genomic sequence.

Article Title: Foaming mixed alcohol/water compositions comprising a structured alkoxylated siloxane
Article Snippet: See WO 02/099091 by Novozymes A/S on Dec. 12, 2002, e.g., CellucleanTM by Novozymes A/S. .. GCG refers to sequence analysis software package (Accelrys, San Diego, Calif., USA). ..

Article Title: Methods and compositions for herbicide tolerance in plants
Article Snippet: .. Optimal alignment of sequences for aligning a comparison window are well known to those skilled in the art and may be conducted by tools such as the local homology algorithm of Smith and Waterman, the homology alignment algorithm of Needleman and Wunsch, the search for similarity method of Pearson and Lipman, and by computerized implementations of these algorithms such as GAP, BESTFIT, FASTA, and TFASTA available as part of the Sequence Analysis software package of the GCG® Wisconsin Package® (Accelrys Inc., San Diego, CA), MEGAlign (DNAStar Inc., 1228 S. Park St., Madison, WI 53715), and MUSCLE (version 3.6) (RC Edgar, “MUSCLE: multiple sequence alignment with high accuracy and high throughput” Nucleic Acids Research 32(5):1792-7 (2004)) for instance with default parameters. ..

Article Title: Histoplasma capsulatum encodes a dipeptidyl peptidase active against the mammalian immunoregulatory peptide, substance P.
Article Snippet: Polymerase chain reaction PCR amplification was performed using the TripleMaster high fidelity PCR system (Eppendorf, Westbury, NY) following the manufacturer’s instructions. .. All primers were designed from sequences obtained from the Histoplasma capsulatum G217B genomic database (www.genome.wustl.edu) using MacVector sequence analysis software (Accelrys). .. Primers were synthesized by Integrated DNA Technologies (IDT, Coralville, IA).

Software:

Article Title: Foaming mixed alcohol/water compositions comprising a structured alkoxylated siloxane
Article Snippet: See WO 02/099091 by Novozymes A/S on Dec. 12, 2002, e.g., CellucleanTM by Novozymes A/S. .. GCG refers to sequence analysis software package (Accelrys, San Diego, Calif., USA). ..

Article Title: Methods and compositions for herbicide tolerance in plants
Article Snippet: .. Optimal alignment of sequences for aligning a comparison window are well known to those skilled in the art and may be conducted by tools such as the local homology algorithm of Smith and Waterman, the homology alignment algorithm of Needleman and Wunsch, the search for similarity method of Pearson and Lipman, and by computerized implementations of these algorithms such as GAP, BESTFIT, FASTA, and TFASTA available as part of the Sequence Analysis software package of the GCG® Wisconsin Package® (Accelrys Inc., San Diego, CA), MEGAlign (DNAStar Inc., 1228 S. Park St., Madison, WI 53715), and MUSCLE (version 3.6) (RC Edgar, “MUSCLE: multiple sequence alignment with high accuracy and high throughput” Nucleic Acids Research 32(5):1792-7 (2004)) for instance with default parameters. ..

Article Title: Histoplasma capsulatum encodes a dipeptidyl peptidase active against the mammalian immunoregulatory peptide, substance P.
Article Snippet: Polymerase chain reaction PCR amplification was performed using the TripleMaster high fidelity PCR system (Eppendorf, Westbury, NY) following the manufacturer’s instructions. .. All primers were designed from sequences obtained from the Histoplasma capsulatum G217B genomic database (www.genome.wustl.edu) using MacVector sequence analysis software (Accelrys). .. Primers were synthesized by Integrated DNA Technologies (IDT, Coralville, IA).

Comparison:

Article Title: Methods and compositions for herbicide tolerance in plants
Article Snippet: .. Optimal alignment of sequences for aligning a comparison window are well known to those skilled in the art and may be conducted by tools such as the local homology algorithm of Smith and Waterman, the homology alignment algorithm of Needleman and Wunsch, the search for similarity method of Pearson and Lipman, and by computerized implementations of these algorithms such as GAP, BESTFIT, FASTA, and TFASTA available as part of the Sequence Analysis software package of the GCG® Wisconsin Package® (Accelrys Inc., San Diego, CA), MEGAlign (DNAStar Inc., 1228 S. Park St., Madison, WI 53715), and MUSCLE (version 3.6) (RC Edgar, “MUSCLE: multiple sequence alignment with high accuracy and high throughput” Nucleic Acids Research 32(5):1792-7 (2004)) for instance with default parameters. ..

High Throughput Screening Assay:

Article Title: Methods and compositions for herbicide tolerance in plants
Article Snippet: .. Optimal alignment of sequences for aligning a comparison window are well known to those skilled in the art and may be conducted by tools such as the local homology algorithm of Smith and Waterman, the homology alignment algorithm of Needleman and Wunsch, the search for similarity method of Pearson and Lipman, and by computerized implementations of these algorithms such as GAP, BESTFIT, FASTA, and TFASTA available as part of the Sequence Analysis software package of the GCG® Wisconsin Package® (Accelrys Inc., San Diego, CA), MEGAlign (DNAStar Inc., 1228 S. Park St., Madison, WI 53715), and MUSCLE (version 3.6) (RC Edgar, “MUSCLE: multiple sequence alignment with high accuracy and high throughput” Nucleic Acids Research 32(5):1792-7 (2004)) for instance with default parameters. ..



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