v4 region Search Results


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  • 99
    New England Biolabs v3 v4 region
    V3 V4 Region, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 69 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Average 99 stars, based on 69 article reviews
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    93
    Illumina Inc v4 region
    Alignment of isolated strain 16S rRNA <t>V4</t> region and representative sequence of Lactobacillus in metagenomics.
    V4 Region, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 93/100, based on 3012 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    92
    Eurofins v4 region
    <t>V4</t> region and 5′ and 3′ PCR primers. The target nucleotides for the PCR primers are depicted in grey (5′region) and black (3′region). The 5′ and 3′ primers include adaptor Illumina sequences for NexGen sequences
    V4 Region, supplied by Eurofins, used in various techniques. Bioz Stars score: 92/100, based on 36 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    BGI Shenzhen v4 region
    <t>V4</t> region and 5′ and 3′ PCR primers. The target nucleotides for the PCR primers are depicted in grey (5′region) and black (3′region). The 5′ and 3′ primers include adaptor Illumina sequences for NexGen sequences
    V4 Region, supplied by BGI Shenzhen, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    90
    Pacific Biosciences v4 region
    <t>V4</t> region and 5′ and 3′ PCR primers. The target nucleotides for the PCR primers are depicted in grey (5′region) and black (3′region). The 5′ and 3′ primers include adaptor Illumina sequences for NexGen sequences
    V4 Region, supplied by Pacific Biosciences, used in various techniques. Bioz Stars score: 90/100, based on 20 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    92
    5 PRIME v4 region
    <t>V4</t> region and 5′ and 3′ PCR primers. The target nucleotides for the PCR primers are depicted in grey (5′region) and black (3′region). The 5′ and 3′ primers include adaptor Illumina sequences for NexGen sequences
    V4 Region, supplied by 5 PRIME, used in various techniques. Bioz Stars score: 92/100, based on 13 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    91
    Microsynth v4 region
    <t>V4</t> region and 5′ and 3′ PCR primers. The target nucleotides for the PCR primers are depicted in grey (5′region) and black (3′region). The 5′ and 3′ primers include adaptor Illumina sequences for NexGen sequences
    V4 Region, supplied by Microsynth, used in various techniques. Bioz Stars score: 91/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    91
    Second Genome Inc 16s v4 region
    <t>V4</t> region and 5′ and 3′ PCR primers. The target nucleotides for the PCR primers are depicted in grey (5′region) and black (3′region). The 5′ and 3′ primers include adaptor Illumina sequences for NexGen sequences
    16s V4 Region, supplied by Second Genome Inc, used in various techniques. Bioz Stars score: 91/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc hypervariable v4 region
    <t>V4</t> region and 5′ and 3′ PCR primers. The target nucleotides for the PCR primers are depicted in grey (5′region) and black (3′region). The 5′ and 3′ primers include adaptor Illumina sequences for NexGen sequences
    Hypervariable V4 Region, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 89/100, based on 131 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    92
    Biomedical Technologies v3 v4 region
    <t>V4</t> region and 5′ and 3′ PCR primers. The target nucleotides for the PCR primers are depicted in grey (5′region) and black (3′region). The 5′ and 3′ primers include adaptor Illumina sequences for NexGen sequences
    V3 V4 Region, supplied by Biomedical Technologies, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc v3 v4 region
    Individual differences at the species level in chronic T. gondii -infected and healthy mice of the first cohort. CD1 mice were infected IP with 500 T. gondii tachyzoites (GT1) in PBS, along with 5 control CD1 mice by the IP route with PBS only. The group was sacrificed at 5 mpi. Whole 16S rDNA libraries were sequenced using the MiSeq Illumina sequencing platform to profile small intestinal microbiome. Sequences were analyzed using QIIME pipeline focusing on the <t>v3-v4</t> region. The graph shows (a) the log-transformed average of highly variable species in infected and control groups and (b) the percentage of highly variable species of the upper intestinal microflora in each mouse. Highly variable species only appeared in the infected mice and the vast majority of them belonged to the Firmicutes phyla.
    V3 V4 Region, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 93/100, based on 1386 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Thermo Fisher v3 v4 region
    Individual differences at the species level in chronic T. gondii -infected and healthy mice of the first cohort. CD1 mice were infected IP with 500 T. gondii tachyzoites (GT1) in PBS, along with 5 control CD1 mice by the IP route with PBS only. The group was sacrificed at 5 mpi. Whole 16S rDNA libraries were sequenced using the MiSeq Illumina sequencing platform to profile small intestinal microbiome. Sequences were analyzed using QIIME pipeline focusing on the <t>v3-v4</t> region. The graph shows (a) the log-transformed average of highly variable species in infected and control groups and (b) the percentage of highly variable species of the upper intestinal microflora in each mouse. Highly variable species only appeared in the infected mice and the vast majority of them belonged to the Firmicutes phyla.
    V3 V4 Region, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 92/100, based on 71 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc variable v4 region
    Genera-level relative abundance of the bacterial populations isolated on the fish. DNA isolated from (A) aerobic and (B) anaerobic cultures of bacteria present on the fish was analyzed by 16S rRNA gene sequencing. The <t>V4</t> region of the bacterial 16S rRNA gene was PCR-amplified and sequenced on the Illumina MiSeq 2 × 250 bp platform. 14 The 20 most abundant genera out of a total of 168 genera detected are shown. PCR indicates polymerase chain reaction; rRNA, ribosomal RNA.
    Variable V4 Region, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 33 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc 16s v4 region
    Genera-level relative abundance of the bacterial populations isolated on the fish. DNA isolated from (A) aerobic and (B) anaerobic cultures of bacteria present on the fish was analyzed by 16S rRNA gene sequencing. The <t>V4</t> region of the bacterial 16S rRNA gene was PCR-amplified and sequenced on the Illumina MiSeq 2 × 250 bp platform. 14 The 20 most abundant genera out of a total of 168 genera detected are shown. PCR indicates polymerase chain reaction; rRNA, ribosomal RNA.
    16s V4 Region, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 89/100, based on 56 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Thermo Fisher iontorrent v4 region
    Genera-level relative abundance of the bacterial populations isolated on the fish. DNA isolated from (A) aerobic and (B) anaerobic cultures of bacteria present on the fish was analyzed by 16S rRNA gene sequencing. The <t>V4</t> region of the bacterial 16S rRNA gene was PCR-amplified and sequenced on the Illumina MiSeq 2 × 250 bp platform. 14 The 20 most abundant genera out of a total of 168 genera detected are shown. PCR indicates polymerase chain reaction; rRNA, ribosomal RNA.
    Iontorrent V4 Region, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 2 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc v4 region amplicons
    Genera-level relative abundance of the bacterial populations isolated on the fish. DNA isolated from (A) aerobic and (B) anaerobic cultures of bacteria present on the fish was analyzed by 16S rRNA gene sequencing. The <t>V4</t> region of the bacterial 16S rRNA gene was PCR-amplified and sequenced on the Illumina MiSeq 2 × 250 bp platform. 14 The 20 most abundant genera out of a total of 168 genera detected are shown. PCR indicates polymerase chain reaction; rRNA, ribosomal RNA.
    V4 Region Amplicons, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 8 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    91
    Illumina Inc v4 region amplification
    Genera-level relative abundance of the bacterial populations isolated on the fish. DNA isolated from (A) aerobic and (B) anaerobic cultures of bacteria present on the fish was analyzed by 16S rRNA gene sequencing. The <t>V4</t> region of the bacterial 16S rRNA gene was PCR-amplified and sequenced on the Illumina MiSeq 2 × 250 bp platform. 14 The 20 most abundant genera out of a total of 168 genera detected are shown. PCR indicates polymerase chain reaction; rRNA, ribosomal RNA.
    V4 Region Amplification, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 91/100, based on 6 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    88
    Roche 16s v3 v4 region
    Genera-level relative abundance of the bacterial populations isolated on the fish. DNA isolated from (A) aerobic and (B) anaerobic cultures of bacteria present on the fish was analyzed by 16S rRNA gene sequencing. The <t>V4</t> region of the bacterial 16S rRNA gene was PCR-amplified and sequenced on the Illumina MiSeq 2 × 250 bp platform. 14 The 20 most abundant genera out of a total of 168 genera detected are shown. PCR indicates polymerase chain reaction; rRNA, ribosomal RNA.
    16s V3 V4 Region, supplied by Roche, used in various techniques. Bioz Stars score: 88/100, based on 4 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    92
    Illumina Inc bacterial v3 v4 region
    Genera-level relative abundance of the bacterial populations isolated on the fish. DNA isolated from (A) aerobic and (B) anaerobic cultures of bacteria present on the fish was analyzed by 16S rRNA gene sequencing. The <t>V4</t> region of the bacterial 16S rRNA gene was PCR-amplified and sequenced on the Illumina MiSeq 2 × 250 bp platform. 14 The 20 most abundant genera out of a total of 168 genera detected are shown. PCR indicates polymerase chain reaction; rRNA, ribosomal RNA.
    Bacterial V3 V4 Region, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 92/100, based on 6 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    DNA Genotek 16s v3 v4 region
    Genera-level relative abundance of the bacterial populations isolated on the fish. DNA isolated from (A) aerobic and (B) anaerobic cultures of bacteria present on the fish was analyzed by 16S rRNA gene sequencing. The <t>V4</t> region of the bacterial 16S rRNA gene was PCR-amplified and sequenced on the Illumina MiSeq 2 × 250 bp platform. 14 The 20 most abundant genera out of a total of 168 genera detected are shown. PCR indicates polymerase chain reaction; rRNA, ribosomal RNA.
    16s V3 V4 Region, supplied by DNA Genotek, used in various techniques. Bioz Stars score: 91/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc variable v3 v4 region
    Genera-level relative abundance of the bacterial populations isolated on the fish. DNA isolated from (A) aerobic and (B) anaerobic cultures of bacteria present on the fish was analyzed by 16S rRNA gene sequencing. The <t>V4</t> region of the bacterial 16S rRNA gene was PCR-amplified and sequenced on the Illumina MiSeq 2 × 250 bp platform. 14 The 20 most abundant genera out of a total of 168 genera detected are shown. PCR indicates polymerase chain reaction; rRNA, ribosomal RNA.
    Variable V3 V4 Region, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 91/100, based on 12 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Illumina Inc hypervariable v3 v4 region
    Genera-level relative abundance of the bacterial populations isolated on the fish. DNA isolated from (A) aerobic and (B) anaerobic cultures of bacteria present on the fish was analyzed by 16S rRNA gene sequencing. The <t>V4</t> region of the bacterial 16S rRNA gene was PCR-amplified and sequenced on the Illumina MiSeq 2 × 250 bp platform. 14 The 20 most abundant genera out of a total of 168 genera detected are shown. PCR indicates polymerase chain reaction; rRNA, ribosomal RNA.
    Hypervariable V3 V4 Region, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 91/100, based on 35 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    91
    TaKaRa 16s v3 v4 region
    Genera-level relative abundance of the bacterial populations isolated on the fish. DNA isolated from (A) aerobic and (B) anaerobic cultures of bacteria present on the fish was analyzed by 16S rRNA gene sequencing. The <t>V4</t> region of the bacterial 16S rRNA gene was PCR-amplified and sequenced on the Illumina MiSeq 2 × 250 bp platform. 14 The 20 most abundant genera out of a total of 168 genera detected are shown. PCR indicates polymerase chain reaction; rRNA, ribosomal RNA.
    16s V3 V4 Region, supplied by TaKaRa, used in various techniques. Bioz Stars score: 91/100, based on 6 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Image Search Results


    Alignment of isolated strain 16S rRNA V4 region and representative sequence of Lactobacillus in metagenomics.

    Journal: Toxicological Sciences

    Article Title: Combination of Metagenomics and Culture-Based Methods to Study the Interaction Between Ochratoxin A and Gut Microbiota

    doi: 10.1093/toxsci/kfu128

    Figure Lengend Snippet: Alignment of isolated strain 16S rRNA V4 region and representative sequence of Lactobacillus in metagenomics.

    Article Snippet: The V4 region of the 16S rRNA was amplified by PCR and sequenced by using a MiSeq platform (Illumina, San Diego) according to the manufacturer's instructions.

    Techniques: Isolation, Sequencing

    V4 region and 5′ and 3′ PCR primers. The target nucleotides for the PCR primers are depicted in grey (5′region) and black (3′region). The 5′ and 3′ primers include adaptor Illumina sequences for NexGen sequences

    Journal: Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.]

    Article Title: Getting Started with Microbiome Analysis: Sample Acquisition to Bioinformatics

    doi: 10.1002/0471142905.hg1808s82

    Figure Lengend Snippet: V4 region and 5′ and 3′ PCR primers. The target nucleotides for the PCR primers are depicted in grey (5′region) and black (3′region). The 5′ and 3′ primers include adaptor Illumina sequences for NexGen sequences

    Article Snippet: Degenerate PCR primers specific for the V4 region (Eurofins – mwg/operon ( ).

    Techniques: Polymerase Chain Reaction

    The 16 S, 23S and 5S rRNA gene. The expanded 16S gene depicts the variable regions. The target V4 region for microbiome analysis is depicted in black.

    Journal: Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.]

    Article Title: Getting Started with Microbiome Analysis: Sample Acquisition to Bioinformatics

    doi: 10.1002/0471142905.hg1808s82

    Figure Lengend Snippet: The 16 S, 23S and 5S rRNA gene. The expanded 16S gene depicts the variable regions. The target V4 region for microbiome analysis is depicted in black.

    Article Snippet: Degenerate PCR primers specific for the V4 region (Eurofins – mwg/operon ( ).

    Techniques:

    Individual differences at the species level in chronic T. gondii -infected and healthy mice of the first cohort. CD1 mice were infected IP with 500 T. gondii tachyzoites (GT1) in PBS, along with 5 control CD1 mice by the IP route with PBS only. The group was sacrificed at 5 mpi. Whole 16S rDNA libraries were sequenced using the MiSeq Illumina sequencing platform to profile small intestinal microbiome. Sequences were analyzed using QIIME pipeline focusing on the v3-v4 region. The graph shows (a) the log-transformed average of highly variable species in infected and control groups and (b) the percentage of highly variable species of the upper intestinal microflora in each mouse. Highly variable species only appeared in the infected mice and the vast majority of them belonged to the Firmicutes phyla.

    Journal: Scientifica

    Article Title: Toxoplasma gondii-Induced Long-Term Changes in the Upper Intestinal Microflora during the Chronic Stage of Infection

    doi: 10.1155/2018/2308619

    Figure Lengend Snippet: Individual differences at the species level in chronic T. gondii -infected and healthy mice of the first cohort. CD1 mice were infected IP with 500 T. gondii tachyzoites (GT1) in PBS, along with 5 control CD1 mice by the IP route with PBS only. The group was sacrificed at 5 mpi. Whole 16S rDNA libraries were sequenced using the MiSeq Illumina sequencing platform to profile small intestinal microbiome. Sequences were analyzed using QIIME pipeline focusing on the v3-v4 region. The graph shows (a) the log-transformed average of highly variable species in infected and control groups and (b) the percentage of highly variable species of the upper intestinal microflora in each mouse. Highly variable species only appeared in the infected mice and the vast majority of them belonged to the Firmicutes phyla.

    Article Snippet: Individually indexed libraries were prepared targeting the v3-v4 region on the 16S rRNA gene using the standard Illumina 16S metagenomic library preparation guide.

    Techniques: Infection, Mouse Assay, Sequencing, Transformation Assay

    Individual differences at species level in acute T. gondii -infected and healthy mice of the first cohort. 5 CD1 mice were infected IP with 500 T. gondii tachyzoites (GT1) in PBS, along with 5 control CD1 mice by the IP route with PBS only. The group was sacrificed at 5 dpi. Whole 16S rDNA libraries were sequenced using the MiSeq Illumina sequencing platform to profile small intestinal microbiome. Sequences were analyzed using QIIME pipeline focusing on the v3-v4 region. The graph shows (a) the log-transformed ratios of averaged standard deviation of the relative abundance of highly variable species in infected and control mice and (b) the percentage of highly variable species of the upper intestinal microflora in each mouse. Lactobacillus, Proteus, and Bacteroidetes species are increasingly unstable in the acute infected mice, while Bacillaceae species appear unstable in the uninfected mice.

    Journal: Scientifica

    Article Title: Toxoplasma gondii-Induced Long-Term Changes in the Upper Intestinal Microflora during the Chronic Stage of Infection

    doi: 10.1155/2018/2308619

    Figure Lengend Snippet: Individual differences at species level in acute T. gondii -infected and healthy mice of the first cohort. 5 CD1 mice were infected IP with 500 T. gondii tachyzoites (GT1) in PBS, along with 5 control CD1 mice by the IP route with PBS only. The group was sacrificed at 5 dpi. Whole 16S rDNA libraries were sequenced using the MiSeq Illumina sequencing platform to profile small intestinal microbiome. Sequences were analyzed using QIIME pipeline focusing on the v3-v4 region. The graph shows (a) the log-transformed ratios of averaged standard deviation of the relative abundance of highly variable species in infected and control mice and (b) the percentage of highly variable species of the upper intestinal microflora in each mouse. Lactobacillus, Proteus, and Bacteroidetes species are increasingly unstable in the acute infected mice, while Bacillaceae species appear unstable in the uninfected mice.

    Article Snippet: Individually indexed libraries were prepared targeting the v3-v4 region on the 16S rRNA gene using the standard Illumina 16S metagenomic library preparation guide.

    Techniques: Infection, Mouse Assay, Sequencing, Transformation Assay, Standard Deviation

    Individual differences at phylum level in chronically T. gondii infected and healthy mice of the second cohort. 45 CD1 mice were infected IP with 500 T. gondii tachyzoites (GT1) in PBS, along with 17 control CD1 mice by the IP route with PBS only. The group was sacrificed at 5 mpi. Whole 16S rDNA libraries were sequenced using the MiSeq Illumina sequencing platform to profile the small intestinal microbiome. Sequences were analyzed using QIIME 2 pipeline focusing on the v3-v4 region. The graph shows enrichment of Bacteroidetes phylum in chronically infected mice.

    Journal: Scientifica

    Article Title: Toxoplasma gondii-Induced Long-Term Changes in the Upper Intestinal Microflora during the Chronic Stage of Infection

    doi: 10.1155/2018/2308619

    Figure Lengend Snippet: Individual differences at phylum level in chronically T. gondii infected and healthy mice of the second cohort. 45 CD1 mice were infected IP with 500 T. gondii tachyzoites (GT1) in PBS, along with 17 control CD1 mice by the IP route with PBS only. The group was sacrificed at 5 mpi. Whole 16S rDNA libraries were sequenced using the MiSeq Illumina sequencing platform to profile the small intestinal microbiome. Sequences were analyzed using QIIME 2 pipeline focusing on the v3-v4 region. The graph shows enrichment of Bacteroidetes phylum in chronically infected mice.

    Article Snippet: Individually indexed libraries were prepared targeting the v3-v4 region on the 16S rRNA gene using the standard Illumina 16S metagenomic library preparation guide.

    Techniques: Infection, Mouse Assay, Sequencing

    Genera-level relative abundance of the bacterial populations isolated on the fish. DNA isolated from (A) aerobic and (B) anaerobic cultures of bacteria present on the fish was analyzed by 16S rRNA gene sequencing. The V4 region of the bacterial 16S rRNA gene was PCR-amplified and sequenced on the Illumina MiSeq 2 × 250 bp platform. 14 The 20 most abundant genera out of a total of 168 genera detected are shown. PCR indicates polymerase chain reaction; rRNA, ribosomal RNA.

    Journal: Microbiology Insights

    Article Title: Analysis of Fish Commonly Sold in Local Supermarkets Reveals the Presence of Pathogenic and Multidrug-Resistant Bacterial Communities

    doi: 10.1177/1178636118786925

    Figure Lengend Snippet: Genera-level relative abundance of the bacterial populations isolated on the fish. DNA isolated from (A) aerobic and (B) anaerobic cultures of bacteria present on the fish was analyzed by 16S rRNA gene sequencing. The V4 region of the bacterial 16S rRNA gene was PCR-amplified and sequenced on the Illumina MiSeq 2 × 250 bp platform. 14 The 20 most abundant genera out of a total of 168 genera detected are shown. PCR indicates polymerase chain reaction; rRNA, ribosomal RNA.

    Article Snippet: The variable (V4) region of the bacterial 16S rRNA gene was polymerase chain reaction–amplified and sequenced on the Illumina MiSeq platform (Illumina, San Diego, CA, USA) using 2 × 250 bp (base pairs) paired-end.

    Techniques: Isolation, Fluorescence In Situ Hybridization, Sequencing, Polymerase Chain Reaction, Amplification