Journal: Clinical, Cosmetic and Investigational Dermatology

Article Title: Founder Effects Contribute to the Population Genetic Structure of the Major Dermatophytosis Pathogen Trichophyton rubrum on Hainan Island, China

doi: 10.2147/CCID.S329569

Figure Lengend Snippet: Ecological and Geographic Information of T. rubrum Isolates in This Study

Article Snippet: T. rubrum genomes were sequenced by Illumina technology (Novogene, Beijing, China) after library construction.

Techniques:

Journal: Studies in Mycology

Article Title: Phylogeny of dermatophytes with genomic character evaluation of clinically distinct Trichophyton rubrum and T. violaceum

doi: 10.1016/j.simyco.2018.02.004

Figure Lengend Snippet: Strains information in phylogeny study.

Article Snippet: To obtain optimal quality of the reference sequence, PacBio RS single molecule real-time (SMRT) sequencing was also applied to the strain of T. rubrum , besides the Illumina methods.

Techniques: Transmission Assay

Journal: Studies in Mycology

Article Title: Phylogeny of dermatophytes with genomic character evaluation of clinically distinct Trichophyton rubrum and T. violaceum

doi: 10.1016/j.simyco.2018.02.004

Figure Lengend Snippet: Raw genome data of T. rubrum CBS 139224 and CBS 118892, T. violaceum CBS 141829.

Article Snippet: To obtain optimal quality of the reference sequence, PacBio RS single molecule real-time (SMRT) sequencing was also applied to the strain of T. rubrum , besides the Illumina methods.

Techniques: Isolation

Journal: Studies in Mycology

Article Title: Phylogeny of dermatophytes with genomic character evaluation of clinically distinct Trichophyton rubrum and T. violaceum

doi: 10.1016/j.simyco.2018.02.004

Figure Lengend Snippet: Specific domains for T. rubrum CBS 139224 and T. violaceum CBS 141829 by interpro analysis. “Null”refers to absence of records in Interpro database.

Article Snippet: To obtain optimal quality of the reference sequence, PacBio RS single molecule real-time (SMRT) sequencing was also applied to the strain of T. rubrum , besides the Illumina methods.

Techniques: Functional Assay, Activity Assay, Binding Assay

Journal: Studies in Mycology

Article Title: Phylogeny of dermatophytes with genomic character evaluation of clinically distinct Trichophyton rubrum and T. violaceum

doi: 10.1016/j.simyco.2018.02.004

Figure Lengend Snippet: Notable different paralogs of T. rubrum CBS 139224 and T. violaceum CBS 141829.

Article Snippet: To obtain optimal quality of the reference sequence, PacBio RS single molecule real-time (SMRT) sequencing was also applied to the strain of T. rubrum , besides the Illumina methods.

Techniques: Binding Assay, Selection

Journal: Studies in Mycology

Article Title: Phylogeny of dermatophytes with genomic character evaluation of clinically distinct Trichophyton rubrum and T. violaceum

doi: 10.1016/j.simyco.2018.02.004

Figure Lengend Snippet: Mitochondrial genomes of Trichophyton rubrum CBS 139224 and T. violaceum CBS 141829. Green blocks: tRNA coding genes, blue arrows: genes, yellow arrows: protein coding sequences, red arrows: rDNA coding sequence. ORFs are shown with blue arrows without corresponding yellow arrows.

Article Snippet: To obtain optimal quality of the reference sequence, PacBio RS single molecule real-time (SMRT) sequencing was also applied to the strain of T. rubrum , besides the Illumina methods.

Techniques: Sequencing